Ctenopharyngodon idella (grass carp): 127510940
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Entry
127510940 CDS
T08802
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03018
RNA degradation
cide03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127510940
09123 Folding, sorting and degradation
03018 RNA degradation
127510940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127510940
03041 Spliceosome [BR:
cide03041
]
127510940
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127510940
mRNA degradation factors
5'-3' decay
Lsm complex
127510940
Spliceosome [BR:
cide03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
127510940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
127510940
NCBI-ProteinID:
XP_051747080
LinkDB
All DBs
Position
4:13681918..13683149
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AA seq
96 aa
AA seq
DB search
MSTALESYINRTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccgctctcgagagttacattaaccggacggttgccatcgtcacatcagatggc
agaatgattgtggggacgctaaagggcttcgaccagacaatcaacctcatcctggatgaa
agccacgagcgggtgttcagctcttcccagggagtagagcaggtggttctgggactgtat
attgtcagaggcgataatgtggctgtaattggtgaaatcgatgaagaaacagattctgcg
ctggatcttggaaacataagagcggaaccgctcaactctgtggtgcactga
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integrated database retrieval system
