Ctenopharyngodon idella (grass carp): 127511022
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Entry
127511022 CDS
T08802
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03015
mRNA surveillance pathway
cide03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127511022
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
127511022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127511022
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
127511022
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
127511022
NCBI-ProteinID:
XP_051747256
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Position
4:complement(14636087..14648905)
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AA seq
581 aa
AA seq
DB search
MADGVDHIDIYADVEEEFNQESDYPGHEQIDLYDDVISPSANNGDAPEDRDYLDNLPAPG
GNEGSKGAPPNVVYTYTGKRIALYIGNLTWWTTDEDLTDAIRSIGINDVLEIKFFENRAN
GQSKGFALVCVGSDSSSRKLMDLLSKRELHGQNPIVTPCNKQSLSQFEMQSRKSTQSGQM
SGEGKAGPPGGGRSGFPLGRGRGRFPGQPGPGGDRFPGPVGPGGPPPHFPGMQGPPRPPS
GPPGPPGPPGPPPPGQGLPPPLGGPPHRGDRPPPPVLFPGQFGQPPMGPMPPGPPPPGYG
PPPGPPPPQQGPPPPGPFPPRPPGPLGPPLGLAPPPHMQGPPPGGPPPAPHVNPAFFPPP
GNNNMPSSDGRGPPPGDPYGRPPPYDRDYGPGGSNFRPPLICGFEPWINEGLVDVKNSGQ
HLHNTSDQGDMDASRTPLSEAEFEEIMNRNRAISSSAISRAVSDASAADYGSAIETLVTA
ISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSVSSRRERSRERDHSRSREKNRRHK
SRSRDRHEDYYRERSRERDRHRERDRDRERDREREREYRHR
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgttgaccatatcgatatttacgcggatgtagaagaggaatttaatcag
gaatcagattatcctggtcatgagcagattgacctgtatgatgatgtcatctcgccatct
gccaacaatggggatgcacccgaggaccgagattacctggataacctgcctgcacccgga
ggcaatgagggctccaaaggagctccaccgaacgtcgtctacacctacactggcaaaaga
atcgctctttacatcggcaacctcacatggtggaccactgatgaagatttgacagatgct
atccgctccataggcatcaatgatgtgctggagataaagttttttgagaatagagcaaat
gggcagtcaaaagggtttgcgctggtctgcgtgggttcagattcctcgtccaggaagctg
atggatctgctgtctaaacgggagctgcacggacaaaacccgatcgtcactccttgcaac
aaacagtcgctcagccagtttgagatgcagtcccgaaaaagcacacagtcaggtcagatg
tcaggggagggcaaggctgggcctccaggaggaggtcgcagtggcttccctctcggcagg
ggtcgagggcgctttccgggccaacctggcccaggcggagaccgcttccctggaccagtt
ggacctggaggacctccaccacactttccaggtatgcaaggaccacctcgtcctccctct
ggcccacctgggcctccaggaccccctggcccccctccacctggacaaggtctgccgccg
cctctcggcggacctcctcaccgaggagaccgccctcctccacctgttctttttcctggt
cagtttggtcaacctccaatgggtccgatgcctcctggcccacccccaccaggatacggg
cctcccccaggcccccctccacctcagcaaggtccgccccctccgggacccttcccaccc
cgcccacctgggcccttaggaccaccgcttggcctcgcacctccacctcacatgcaggga
cccccgcctggaggtccaccaccagctcctcatgtcaacccagcctttttccctccacct
ggaaacaacaacatgccatcatccgacggcaggggccctccacccggcgacccctacggc
cgccctcctccttatgacagagactacggccctggtggcagtaacttcagaccccctcta
atatgtggttttgagccctggataaacgaggggttggttgatgtgaaaaactctggccag
cacttgcacaatacaagtgatcaaggggacatggatgcgtctcgcactcctctgagcgaa
gcagagtttgaggagatcatgaatcgtaaccgagcaatctccagcagtgctatctcaagg
gctgtgtcagatgcgagcgcagctgattacggcagcgctatagagactctggtgacggcc
atctctctgatcaagcagtcgaaggtttccgctgatgaccgctgtaaggttctcatcagc
tcactgcaggattgcttacatggaattgaatccaaatcctatggctctgtgtcgagcagg
cgggaaaggtccagggagagggaccacagtcgttctcgtgagaagaaccgtcgacacaag
tctcgcagccgagaccggcacgaggactattaccgggaacgcagccgcgaaagagaccgc
catcgcgagcgagaccgtgaccgagagagagacagagaacgtgagagggaatatcgccac
cgttag
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integrated database retrieval system
