Ctenopharyngodon idella (grass carp): 127511361
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Entry
127511361 CDS
T08802
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease isoform X1
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
127511361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cide03400
]
127511361
Enzymes [BR:
cide01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
127511361
DNA repair and recombination proteins [BR:
cide03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
127511361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
127511361
NCBI-ProteinID:
XP_051748107
LinkDB
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Position
4:complement(14195807..14199608)
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AA seq
341 aa
AA seq
DB search
MHFGLYSSRILCVRVCAVSFFRVCGLKTTVNMPKRAKKNEEAVEGETGNGTAPAKKEKKG
KEPEAPILYEDPPDKMTSKDGRAANMKITSWNVDGLRAWVKKNGLDWVRKEDPDILCLQE
TKCAEKALPSDITEMPEYPHKYWAGSEDKEGYSGVAMLCKTEPLNVTYGIGKEEHDKEGR
VITAEFPSFFLVTAYVPNASRGLVRLDYRKTWDVDFRAYLSGLDQRKPLVLCGDLNVAHQ
EIDLKNPKGNRKNAGFTPEEREGFTQLLEAGFTDSFRELYPEQANAYTFWTYMMNSRAKN
VGWRLDYFVLSAALLPGLCDSKIRNTAMGSDHCPITLLLAV
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgcattttggtttatacagttcacgcattttatgtgttcgtgtgtgtgctgtcagtttt
tttcgtgtgtgtggccttaaaacaactgtaaacatgcccaaaagagccaagaagaatgag
gaagctgtggagggggagactggcaatggaactgcacctgcaaagaaagagaaaaaaggg
aaagagccagaggccccgattctgtatgaagaccctccagataagatgaccagtaaggat
ggccgtgcagccaacatgaaaatcacctcctggaacgtggacggtctgcgtgcatgggtc
aaaaagaacggccttgattgggtacgtaaggaggacccagacatactgtgtctgcaggaa
actaagtgcgctgagaaagccctgccgtctgatatcactgaaatgcccgagtatccacac
aagtactgggctggatcagaggataaggagggttacagtggagtggccatgctctgcaag
accgaacccctcaatgtcacctacggtattggtaaagaggaacatgataaagagggtcgg
gttatcactgctgagtttccatctttcttcttggtcactgcgtatgtgcccaatgccagc
cgtggtttggtgcggctcgactaccgcaagacctgggacgtggatttccgggcctacctg
agcggcttggaccagcgcaagcccctggtgctgtgtggcgatctgaatgtggcccatcaa
gagatcgatcttaaaaaccctaagggtaaccgcaagaacgcaggcttcacccccgaggag
cgtgagggcttcacacagctacttgaggccggcttcaccgacagtttccgggaactgtat
ccggaacaagccaatgcctacaccttctggacctacatgatgaactctcgagccaaaaac
gtcggctggcgtttggactactttgtgctgtcggccgcattactcccgggtctgtgcgac
agcaagatccgaaacacggcaatgggaagtgaccactgtcctattaccctgcttttggct
gtgtag
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