Ctenopharyngodon idella (grass carp): 127511778
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Entry
127511778 CDS
T08802
Name
(RefSeq) exosome complex component RRP45
KO
K03678
exosome complex component RRP45
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127511778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127511778
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
127511778
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
127511778
NCBI-ProteinID:
XP_051748450
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All DBs
Position
1:18414538..18418662
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AA seq
393 aa
AA seq
DB search
MRDTPLSNCERLFLLKAIEEKKRLDGRQTYDYRNIKITFGTDYGCCIVELGKTRVLCQVS
CELVPPKDSRPTEGIMFFNLELSPMASPAFEPNRQSELLVVLNRQLERCLRNSKCIDTES
LCVVSGEKVWQIRVDVHVLNHDGNLMDAASIAAISALSHFRRPDVAIQGRDVTVFSPEER
DPIPLSIYHMPICVSFAFFLQGSYLLVDPCEREERVKDGLLVIAMNKHQEICSIQSSGGI
MLLKDQVLRCSKIASVKVSEITELINKALENDKKIRKEGGKFGFAESMPKERITTLKRDE
APVEMTDVKETANDIVNRTEPTTEVVPSPVLVATGTAQVGEGIVNSWGLDEDEEDEPLTE
DRKTDEVMIISDSEEEEVVILNEEAQKSKKNQK
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgagggatactccgctgtcaaactgcgagaggctttttcttcttaaagctatagaagag
aaaaaacgcttagatgggagacagacatacgattaccggaatattaaaatcacttttgga
accgattatggctgctgcattgtggaacttggaaaaacaagggtgttgtgtcaggtatct
tgtgagttggtccctccaaaagattcacgtcccacagaaggcatcatgttttttaatttg
gaattgtctcccatggcatcaccagcctttgagcccaacaggcagtcagagttgttggtg
gtgttaaacagacagcttgagaggtgtctaaggaattctaaatgcatagacaccgagtct
ctatgtgtagtttcaggagaaaaggtttggcagatacgggttgatgtccatgtgttgaat
catgatggaaacctgatggatgcagcaagcattgctgccatatctgcactctcacacttt
aggcggccagacgtcgctattcagggacgagatgttactgtgttcagtccagaggagaga
gatccaattcctctgagcatttatcacatgcccatatgtgtcagcttcgctttcttcctg
cagggctcgtatttgctcgtggacccttgtgaacgagaagagcgagtgaaggatggattg
ttggtgatagccatgaacaaacatcaggagatctgctccattcagtccagtggagggatc
atgctactgaaagaccaggttttaagatgcagcaaaatagcaagtgtaaaagtttctgaa
attacagagctcattaacaaagccttggagaatgacaaaaaaatcagaaaggagggtgga
aagtttggctttgctgagtccatgcccaaagagcgaatcacaacccttaagagagacgaa
gccccggtggagatgacagatgttaaagagacagccaatgacattgtgaacagaacagaa
cctaccacagaagttgttccctctcctgttcttgttgctacgggaactgcacaggtaggt
gagggcattgtgaactcatggggacttgatgaggatgaagaggatgagcctctgacagag
gacagaaaaacagatgaagtgatgataatctcagacagtgaagaggaggaagttgtcatt
cttaatgaagaagcccagaaatccaagaagaatcaaaaatga
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