Ctenopharyngodon idella (grass carp): 127512039
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Entry
127512039 CDS
T08802
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127512039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cide03021
]
127512039
03036 Chromosome and associated proteins [BR:
cide03036
]
127512039
Transcription machinery [BR:
cide03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127512039
Chromosome and associated proteins [BR:
cide03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
127512039
Chromatin remodeling factors
BAF complex
127512039
PBAF complex
127512039
GBAF(ncBAF) complex
127512039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
127512039
NCBI-ProteinID:
XP_051748543
LinkDB
All DBs
Position
5:complement(18453187..18513313)
Genome browser
AA seq
1577 aa
AA seq
DB search
MSTPNEPPVGMSHAGPSPGAGLSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSIPHAMQG
QGTGEYPQDMHPMHKPLEGMHEKGMGDDMHYGQMKGVGMRSLHSGMGPPQSPMDQHSQGY
MSPHPSPMSQVPEHVPSPMSGGGPTPPQMSQGQSPMMPMDPQGMGQQARGQSAFSPVQLQ
QLRAQILAYKILGRGQPLPENLQLAVQGKRSLPTMQQQPVNTGPYNRPLGMPMPHGGPAT
GPCPSPAMQTLTQSSGPKPWPEGQGTETPSTPQKLAVPAPSGRPSPAPPLAPTGTQPVPS
TSLTPQPQPQPPSGPGQPSLIIQLQQKQNRITPIQKPQGLDPVELLQEREYRLQARIAHR
IQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRLDVVACMRRDTTLETALNSKAYKR
SKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSISGKIQKLS
KAIATWHTNTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYV
ANLTELVYEHKAAQAAKEKKRKRKKKKKEAGDAEGMGAIGPDGEPIDENSQMSELPVKVI
QTETGKVLQGTDAPKSSQLEAWLEMNPGYEVAPRSDSEESGSEFEEEDDEEVVSRAESEE
KKVIDPNSDEVSETAAKHIIESAKQDVDDEYSVQAGETSSQSYYGVAHAVIERVEKQSTL
LINGTLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMENKRLNGPYLI
IVPLSTLSNWVYELDKWAPSIVKIAYKGTPSMRRSFVPQLRSGKFNVLITTYEYIIKDKH
ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFL
LPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQL
PEKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGSEKDKKGKGGAKTLMNTIMQLKKICNH
PYMFQHIEESFAEHLGYPNGIINGPDLYRASGKFELLDRILPKLKATNHRVLLFCQMTSL
MTIMEDYFAYRNFLYLRLDGTTKSEDRALLLKKFNDEGSQYFIFLLSTRAGGLGLNLQAA
DTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKV
IQAGMFDQKSSSHERRAFLQAILEHEEQNEHILYVSYQEEDEVPDDETLNQMIARNEDEF
ELFMRMDMDRRREDARNPKRKPRLMEEDELPSWILKDDAEVERLTCEEEEEKIFGRGSRH
RRDVDYSDALTEKQWLRAIEDGNLEEIEEEIRLKRRKRRRHVDKEMRREDGDKAKKRRGR
PPAEKLSPNPPKLTKQMNAIVDTVINYRDASGRQLSEVFVQLPSRKELPEYYELIRKPVD
FKKIKERVRNHKYRSVSDLEKDVMLLCHNAQTYNLEGSQIYEDSIVLQSVFKSARQKIAR
EESDDDSNDDDDDEEESEEESKSVKVKIKLNKRDERCQDKGKKRPSRGKAKPVVSDDDSE
EEQEDNEQSEGSQSDDE
NT seq
4734 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacccccaatgagccaccggttgggatgtcccatgctggtccctcaccaggtgct
ggcctgtctccggggcccatcctagggcccagccctggacccggcccctctcctggctct
gtacacagcatgatgggccccagcccagggcccccaagcatcccgcatgccatgcagggc
caagggactggagagtatccacaggacatgcacccaatgcataagccattggagggaatg
catgagaaggggatgggagacgatatgcactatggccagatgaagggggtgggcatgaga
tctctgcacagtggcatgggtcctccacagagccctatggatcaacacagtcaaggatac
atgtcccctcatccctcaccaatgagccaggtgccggagcatgtgcctagccctatgtca
ggaggagggccgaccccgccgcaaatgtctcagggtcagtcgcccatgatgcccatggat
ccgcaggggatgggacagcaggctaggggtcagtctgccttcagcccagtccagctacag
caactcagggctcaaatcctggcttacaagatccttggccgtggtcagcctctgcccgag
aatctgcagttagctgtgcagggcaagagaagcctccccacaatgcagcagcagcccgtc
aacactggcccctacaacagacctctaggtatgccaatgcctcatggagggcctgcaact
ggcccgtgtccctctccagccatgcagactcttacccagagctctgggcccaaaccgtgg
cctgaaggtcaaggtacagagacccccagcactccacagaagctggcggtcccagctccc
agcggcagaccgtctccagctcccccactggcccccactggcacacaacctgtgcccagc
acctctctcactccccaaccccaacctcagccaccatctggaccaggccagccctctctc
atcatccagctccagcagaaacagaatcgcatcaccccgattcagaagcctcagggtctg
gaccctgtcgaactcttgcaagagagagaataccgccttcaggctaggattgctcacaga
attcaggagctggagaatctgccggggtcgctgccacctgatctgaggacgaaagctact
gtggagctgaaggccttaagactgctcaacttccagcggcagctgaggctagatgttgta
gcctgcatgcgcagagacacaactctggagactgccttgaactccaaggcctacaagcgc
agcaagagacagacgctgagagaagctcgcatgacagagaaactagagaagcagcagaaa
attgagcaagagaggaagcgccgacagaaacaccaggagtatctcaacagcattctgcaa
catgcaaaagatttcaaggaatatcataggtccatctctggaaaaatccaaaagctgtcc
aaggccatcgccacctggcacaccaacacagagagagagcagaagaaggagactgaaaga
attgagaaagagaggatgaggagactgatggctgaggatgaagaaggttacaggaagcta
attgaccagaagaaggacaagcgtctggcctaccttcttcaacaaacagatgaatacgtg
gccaacctgactgagcttgtctacgagcacaaggctgctcaagctgcaaaggagaagaag
aggaagagaaagaagaaaaagaaggaagctggtgatgccgaaggaatgggagccatcggg
cctgatggagaacccatagatgagaacagccagatgagtgagctgccagtcaaagtcatt
cagacagagacggggaaagtgctacaggggacagatgcccccaagtccagtcagttagag
gcttggctcgagatgaaccctggctatgaagttgctccacggtcagacagtgaagagagt
ggctcggaatttgaagaggaggatgatgaagaggtggtctccagagccgaatccgaagaa
aagaaagtcatcgatcccaacagtgatgaagtatccgaaacagcagccaagcacatcata
gagtctgctaagcaggatgtggatgatgagtacagtgttcaggcgggagagaccagctcc
cagtcttactatggagtggcccatgcggtcatagagagggtggagaagcagtccaccctc
ctgatcaatgggaccctcaaacagtaccagatccagggtctggaatggatggtgtctctg
tacaacaacaacctgaatggtattctggccgatgagatgggtctggggaagaccattcaa
actatcgcacttatcacctatctaatggaaaacaagaggctcaacgggccatacctcatc
attgtaccgctctcgactttgtccaactgggtttatgagctggacaagtgggcaccaagt
attgtgaaaattgcctacaagggcactccttcaatgcggaggtcttttgtgccgcagctc
cgcagtgggaagtttaatgtccttataaccacctacgagtacatcatcaaagacaagcac
attctcgccaagattcgctggaagtatatgattgtggatgagggccatcgcatgaagaac
catcactgcaagctcacgcaggtgttgaacacccattatgtcgctcccaggaggctgttg
ctcactggaacccctttgcagaacaaattacctgagctctgggctctgcttaacttcctg
ttgcccaccatcttcaaaagttgcagcacctttgagcagtggttcaatgctccttttgca
atgacaggagagagggtggatctaaatgaagaggagactatcctcatcatccgccgtttg
cataaagtattacgtcccttccttctgcgcagactgaagaaagaagtggagtctcagtta
cccgagaaggtggagtatgtcatcaaatgtgacatgtcagccatccagaaggttctgtac
aggcacatgcagggcaaaggtatcctgctcactgatggctcagagaaagacaagaagggt
aaaggaggagccaagactttaatgaacaccatcatgcagctgaagaagatctgtaaccat
ccctacatgtttcagcacattgaggaatcctttgctgaacacttgggatatccaaatggc
attattaacggacctgacctgtatcgtgcctcgggcaagtttgagttactggaccgcatc
ctgcccaagctgaaggccaccaatcacagagtgcttctgttctgtcagatgacatccctc
atgaccatcatggaggattattttgcctaccgcaacttcctctatttgcgtctggatgga
actacgaagtctgaggatcgggcattgcttttaaagaaattcaatgatgaaggctcccag
tattttatcttcctgctgagcaccagagcaggaggtctgggcctcaacttgcaagctgca
gacaccgttgtgatctttgacagcgactggaacccccaccaggacttgcaggcccaggac
cgagcccaccgtatcggccagcagaacgaagtacgcgtactgcgtctgtgcactgttaac
agtgtggaggaaaagattcttgcggcggccaagtataaactgaatgttgatcagaaggtc
attcaggcaggcatgtttgatcagaagtcctccagccatgaacgcagagccttcctgcag
gccattctggagcacgaggagcagaatgagcatatattgtatgtgtcataccaggaggaa
gatgaagttccagatgatgaaactctcaatcaaatgattgctcgtaatgaggacgaattt
gagcttttcatgcgcatggacatggaccgccgtcgagaagatgcacgcaaccctaagcgt
aaacctcggctaatggaagaggatgagctgccatcatggatcctgaaggatgatgcagag
gtggagcggctgacctgtgaggaggaagaggaaaagatttttggccggggatctcgtcac
cgcagagatgtcgactacagcgacgcgttgacggaaaagcagtggctgagggctatagag
gatggcaacctggaggaaatcgaggaggaaatacggctgaagaggcgcaagcgtaggaga
catgtggacaaagaaatgaggcgtgaggacggagacaaggccaagaaaaggagaggacgc
cctccagcagagaagctctccccaaacccacccaaactcacaaaacagatgaatgctatt
gtcgatactgtcatcaattacagagacgcatcaggccgtcagctcagcgaggtctttgtg
cagttgccctccaggaaagagctccctgaatactatgaactgataaggaagccagtggac
ttcaagaagatcaaggagcgtgtgcgcaaccacaagtacaggagtgtgagcgatctggag
aaagacgtcatgcttctttgtcacaatgctcagacttacaatctagagggctctcagatc
tatgaggactccattgttctccagtcagtattcaagagtgccagacaaaagattgctagg
gaggagagtgacgatgacagcaatgatgatgacgacgatgaggaagaatccgaggaagag
tctaagtcagtgaaggtgaaaattaagctgaataaacgggacgaaagatgtcaggacaaa
ggcaagaagagaccgagtcgcggaaaggccaagcccgtggtcagtgatgatgacagcgag
gaagaacaggaggacaatgagcagtcagaggggagccaaagcgacgatgagtga
DBGET
integrated database retrieval system
