Ctenopharyngodon idella (grass carp): 127512039
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Entry
127512039 CDS
T08802
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127512039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cide03021
]
127512039
03036 Chromosome and associated proteins [BR:
cide03036
]
127512039
Transcription machinery [BR:
cide03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127512039
Chromosome and associated proteins [BR:
cide03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
127512039
Chromatin remodeling factors
BAF complex
127512039
PBAF complex
127512039
GBAF(ncBAF) complex
127512039
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
127512039
NCBI-ProteinID:
XP_051748543
LinkDB
All DBs
Position
5:complement(18453187..18513313)
Genome browser
AA seq
1577 aa
AA seq
DB search
MSTPNEPPVGMSHAGPSPGAGLSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSIPHAMQG
QGTGEYPQDMHPMHKPLEGMHEKGMGDDMHYGQMKGVGMRSLHSGMGPPQSPMDQHSQGY
MSPHPSPMSQVPEHVPSPMSGGGPTPPQMSQGQSPMMPMDPQGMGQQARGQSAFSPVQLQ
QLRAQILAYKILGRGQPLPENLQLAVQGKRSLPTMQQQPVNTGPYNRPLGMPMPHGGPAT
GPCPSPAMQTLTQSSGPKPWPEGQGTETPSTPQKLAVPAPSGRPSPAPPLAPTGTQPVPS
TSLTPQPQPQPPSGPGQPSLIIQLQQKQNRITPIQKPQGLDPVELLQEREYRLQARIAHR
IQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRLDVVACMRRDTTLETALNSKAYKR
SKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSISGKIQKLS
KAIATWHTNTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYV
ANLTELVYEHKAAQAAKEKKRKRKKKKKEAGDAEGMGAIGPDGEPIDENSQMSELPVKVI
QTETGKVLQGTDAPKSSQLEAWLEMNPGYEVAPRSDSEESGSEFEEEDDEEVVSRAESEE
KKVIDPNSDEVSETAAKHIIESAKQDVDDEYSVQAGETSSQSYYGVAHAVIERVEKQSTL
LINGTLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMENKRLNGPYLI
IVPLSTLSNWVYELDKWAPSIVKIAYKGTPSMRRSFVPQLRSGKFNVLITTYEYIIKDKH
ILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFL
LPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQL
PEKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGSEKDKKGKGGAKTLMNTIMQLKKICNH
PYMFQHIEESFAEHLGYPNGIINGPDLYRASGKFELLDRILPKLKATNHRVLLFCQMTSL
MTIMEDYFAYRNFLYLRLDGTTKSEDRALLLKKFNDEGSQYFIFLLSTRAGGLGLNLQAA
DTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKV
IQAGMFDQKSSSHERRAFLQAILEHEEQNEHILYVSYQEEDEVPDDETLNQMIARNEDEF
ELFMRMDMDRRREDARNPKRKPRLMEEDELPSWILKDDAEVERLTCEEEEEKIFGRGSRH
RRDVDYSDALTEKQWLRAIEDGNLEEIEEEIRLKRRKRRRHVDKEMRREDGDKAKKRRGR
PPAEKLSPNPPKLTKQMNAIVDTVINYRDASGRQLSEVFVQLPSRKELPEYYELIRKPVD
FKKIKERVRNHKYRSVSDLEKDVMLLCHNAQTYNLEGSQIYEDSIVLQSVFKSARQKIAR
EESDDDSNDDDDDEEESEEESKSVKVKIKLNKRDERCQDKGKKRPSRGKAKPVVSDDDSE
EEQEDNEQSEGSQSDDE
NT seq
4734 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacccccaatgagccaccggttgggatgtcccatgctggtccctcaccaggtgct
ggcctgtctccggggcccatcctagggcccagccctggacccggcccctctcctggctct
gtacacagcatgatgggccccagcccagggcccccaagcatcccgcatgccatgcagggc
caagggactggagagtatccacaggacatgcacccaatgcataagccattggagggaatg
catgagaaggggatgggagacgatatgcactatggccagatgaagggggtgggcatgaga
tctctgcacagtggcatgggtcctccacagagccctatggatcaacacagtcaaggatac
atgtcccctcatccctcaccaatgagccaggtgccggagcatgtgcctagccctatgtca
ggaggagggccgaccccgccgcaaatgtctcagggtcagtcgcccatgatgcccatggat
ccgcaggggatgggacagcaggctaggggtcagtctgccttcagcccagtccagctacag
caactcagggctcaaatcctggcttacaagatccttggccgtggtcagcctctgcccgag
aatctgcagttagctgtgcagggcaagagaagcctccccacaatgcagcagcagcccgtc
aacactggcccctacaacagacctctaggtatgccaatgcctcatggagggcctgcaact
ggcccgtgtccctctccagccatgcagactcttacccagagctctgggcccaaaccgtgg
cctgaaggtcaaggtacagagacccccagcactccacagaagctggcggtcccagctccc
agcggcagaccgtctccagctcccccactggcccccactggcacacaacctgtgcccagc
acctctctcactccccaaccccaacctcagccaccatctggaccaggccagccctctctc
atcatccagctccagcagaaacagaatcgcatcaccccgattcagaagcctcagggtctg
gaccctgtcgaactcttgcaagagagagaataccgccttcaggctaggattgctcacaga
attcaggagctggagaatctgccggggtcgctgccacctgatctgaggacgaaagctact
gtggagctgaaggccttaagactgctcaacttccagcggcagctgaggctagatgttgta
gcctgcatgcgcagagacacaactctggagactgccttgaactccaaggcctacaagcgc
agcaagagacagacgctgagagaagctcgcatgacagagaaactagagaagcagcagaaa
attgagcaagagaggaagcgccgacagaaacaccaggagtatctcaacagcattctgcaa
catgcaaaagatttcaaggaatatcataggtccatctctggaaaaatccaaaagctgtcc
aaggccatcgccacctggcacaccaacacagagagagagcagaagaaggagactgaaaga
attgagaaagagaggatgaggagactgatggctgaggatgaagaaggttacaggaagcta
attgaccagaagaaggacaagcgtctggcctaccttcttcaacaaacagatgaatacgtg
gccaacctgactgagcttgtctacgagcacaaggctgctcaagctgcaaaggagaagaag
aggaagagaaagaagaaaaagaaggaagctggtgatgccgaaggaatgggagccatcggg
cctgatggagaacccatagatgagaacagccagatgagtgagctgccagtcaaagtcatt
cagacagagacggggaaagtgctacaggggacagatgcccccaagtccagtcagttagag
gcttggctcgagatgaaccctggctatgaagttgctccacggtcagacagtgaagagagt
ggctcggaatttgaagaggaggatgatgaagaggtggtctccagagccgaatccgaagaa
aagaaagtcatcgatcccaacagtgatgaagtatccgaaacagcagccaagcacatcata
gagtctgctaagcaggatgtggatgatgagtacagtgttcaggcgggagagaccagctcc
cagtcttactatggagtggcccatgcggtcatagagagggtggagaagcagtccaccctc
ctgatcaatgggaccctcaaacagtaccagatccagggtctggaatggatggtgtctctg
tacaacaacaacctgaatggtattctggccgatgagatgggtctggggaagaccattcaa
actatcgcacttatcacctatctaatggaaaacaagaggctcaacgggccatacctcatc
attgtaccgctctcgactttgtccaactgggtttatgagctggacaagtgggcaccaagt
attgtgaaaattgcctacaagggcactccttcaatgcggaggtcttttgtgccgcagctc
cgcagtgggaagtttaatgtccttataaccacctacgagtacatcatcaaagacaagcac
attctcgccaagattcgctggaagtatatgattgtggatgagggccatcgcatgaagaac
catcactgcaagctcacgcaggtgttgaacacccattatgtcgctcccaggaggctgttg
ctcactggaacccctttgcagaacaaattacctgagctctgggctctgcttaacttcctg
ttgcccaccatcttcaaaagttgcagcacctttgagcagtggttcaatgctccttttgca
atgacaggagagagggtggatctaaatgaagaggagactatcctcatcatccgccgtttg
cataaagtattacgtcccttccttctgcgcagactgaagaaagaagtggagtctcagtta
cccgagaaggtggagtatgtcatcaaatgtgacatgtcagccatccagaaggttctgtac
aggcacatgcagggcaaaggtatcctgctcactgatggctcagagaaagacaagaagggt
aaaggaggagccaagactttaatgaacaccatcatgcagctgaagaagatctgtaaccat
ccctacatgtttcagcacattgaggaatcctttgctgaacacttgggatatccaaatggc
attattaacggacctgacctgtatcgtgcctcgggcaagtttgagttactggaccgcatc
ctgcccaagctgaaggccaccaatcacagagtgcttctgttctgtcagatgacatccctc
atgaccatcatggaggattattttgcctaccgcaacttcctctatttgcgtctggatgga
actacgaagtctgaggatcgggcattgcttttaaagaaattcaatgatgaaggctcccag
tattttatcttcctgctgagcaccagagcaggaggtctgggcctcaacttgcaagctgca
gacaccgttgtgatctttgacagcgactggaacccccaccaggacttgcaggcccaggac
cgagcccaccgtatcggccagcagaacgaagtacgcgtactgcgtctgtgcactgttaac
agtgtggaggaaaagattcttgcggcggccaagtataaactgaatgttgatcagaaggtc
attcaggcaggcatgtttgatcagaagtcctccagccatgaacgcagagccttcctgcag
gccattctggagcacgaggagcagaatgagcatatattgtatgtgtcataccaggaggaa
gatgaagttccagatgatgaaactctcaatcaaatgattgctcgtaatgaggacgaattt
gagcttttcatgcgcatggacatggaccgccgtcgagaagatgcacgcaaccctaagcgt
aaacctcggctaatggaagaggatgagctgccatcatggatcctgaaggatgatgcagag
gtggagcggctgacctgtgaggaggaagaggaaaagatttttggccggggatctcgtcac
cgcagagatgtcgactacagcgacgcgttgacggaaaagcagtggctgagggctatagag
gatggcaacctggaggaaatcgaggaggaaatacggctgaagaggcgcaagcgtaggaga
catgtggacaaagaaatgaggcgtgaggacggagacaaggccaagaaaaggagaggacgc
cctccagcagagaagctctccccaaacccacccaaactcacaaaacagatgaatgctatt
gtcgatactgtcatcaattacagagacgcatcaggccgtcagctcagcgaggtctttgtg
cagttgccctccaggaaagagctccctgaatactatgaactgataaggaagccagtggac
ttcaagaagatcaaggagcgtgtgcgcaaccacaagtacaggagtgtgagcgatctggag
aaagacgtcatgcttctttgtcacaatgctcagacttacaatctagagggctctcagatc
tatgaggactccattgttctccagtcagtattcaagagtgccagacaaaagattgctagg
gaggagagtgacgatgacagcaatgatgatgacgacgatgaggaagaatccgaggaagag
tctaagtcagtgaaggtgaaaattaagctgaataaacgggacgaaagatgtcaggacaaa
ggcaagaagagaccgagtcgcggaaaggccaagcccgtggtcagtgatgatgacagcgag
gaagaacaggaggacaatgagcagtcagaggggagccaaagcgacgatgagtga
DBGET
integrated database retrieval system
