Ctenopharyngodon idella (grass carp): 127512158
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Entry
127512158 CDS
T08802
Name
(RefSeq) transcriptional regulator ATRX-like isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
127512158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cide03000
]
127512158
03036 Chromosome and associated proteins [BR:
cide03036
]
127512158
Transcription factors [BR:
cide03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
127512158
Chromosome and associated proteins [BR:
cide03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
127512158
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
UvdE
Motif
Other DBs
NCBI-GeneID:
127512158
NCBI-ProteinID:
XP_051748767
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All DBs
Position
5:25588589..25616181
Genome browser
AA seq
1760 aa
AA seq
DB search
MSAEVLKPRPVAGGGSKLGELIGKLHEYLAAATEDKNEPTLPGHWNGTTAKEYLEQQAHA
QTAEESSGPSEVGMLSSARSRRKPTVVTKRSGMNESDASSESGAEDVMSVHSSDHDTNFL
PKGTVFVLPEPVSNEARDDFRGPEFRSRRVYKQHRDGGDRRRGGYEMERVNCTACGQQVN
HFQRDSVYRHPMLKVLICKSCFKYYMSDDISKDSEGMDEQCRWCAEGGSLIGCDYCSNAF
CKKCVLRNLGRKELSTILEEERKWYCYVCSPEPLVELVLACDSVLESLEQAQKRVSRTEP
NSVRGKANKGGRGASYLMGAGGGPVPSAGLYQRMQRFVDVTTSLSHSFKAVVHREREEHG
NQEEKQERIGQLRMFRAVLDDLQAANSALQEALDHELTGSKRGSRVALDNKTKGRRRPKK
AMSSQSPGLTKELVVKLTPVPVSPQPISSNFPSINPSPDRQKIKVGMTDGSLEESEAKVE
MEKGMEIEMEGMTERGGHVENYCGNNDDEEKEEEEEEEEEEEEEEEEEDQTDPKSLSLSE
ENKRSPRVKTTPRRRRTNTNPSAEHAGLAEDDSDSDEVPEVLLQTAAAMANSEEEGLVGS
SWDGDEVNQHVRKQRLFGLVKTTPPDRGSRKRNLKERSSSSSSSSSASSRRGSQDQGSTV
RMTRGRAHKVARMTGQSGSSSSEVGGPELESGPSSDSDDQRIKPLTEGVTLLGSGNFQQS
SGDEMDIQPGPSLPVEDDDLENRIARQILLAQIKANLSSDSELEASTDEQSESTKGEEVV
KKSKSESSETTDDDDNYGSESSGSKPGSRHRHRLLRHGLTLSEAEAKSQKQGGEKKKRER
EVQDLGCVIVSSDETSDSDLCEELSLSESEEIGSQSPTLNEKLQSPSRTPDKTTAADDDV
SLTTEECLRGTPRGRRQIRRLLEVGQLARETQSALKEEEERRRRLAEREKQRLDIERRER
EDADSEVILVSERQATPLVLEQDDVTHKPIVQVHMGFLNKLKPHQREGVRFMWDCCCESV
QNVKSSPGSGCILAHCMGLGKTFQVIVFLHTVLLCKELPLKRALVVCPLNTVLNWRSEFD
QWQRGLRPHRLRVAELATVKSVAVRVELLNDWFTNGGVMIMGYEVFRILTHTDSSKYSKH
KESFRSILLDPGPDLVVCDEGHVLRNADSSISKAMRALRTRRRIILTGTPLQNNLTEYHC
MVNFIKENLLGSLKEFRNRFINPIQNGQCADSTPADVRLMKNRSHVLHQMMSGFIQRRDY
LVLMSCLPPKREYVLSVRMTPLQCRLYTHYLQTYTGKGAGVNSLFQDLHVLSLIWTHPWC
LKLAQLSRNKGKEQEPASVLTGLDAGLVRDSVKPNGSELRDTNVTGLVGNGEGNTDPVPL
LNQKPDVTNTATTEIPGGEAGFMGNGPSADWYLPFVTAADAKVLEHSGKLQLLLEILHWA
EELQDKVLVFSQSLISLDLIESFLLYADETRGKECCPYKGKKSWVRNKDYYRLDGNTSAC
ARKRWAQEFNNTKNIRGRLFLISTRAGSLGINLVAANRVVVFDACWNPSYDIQSIFRVYR
FGQKKTVAVYRFLAQGTMEQNIYERQVAKQSLSSRVLDQQQIQRHFTHSQLNELYRFQPD
LRPSKHTETPADEVLVRLLQSCGQLIVSYHEHNSLLDHREEEELSEEERRAAWDEYRAEK
KAAVQISNEAAARIANRDLQLSHTQQAVALQNFSYTTKNTPPTSLSVKQGNAQHSAAQLN
SAALQLTQPKVIYSVSKTKT
NT seq
5283 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctgaagtcctcaaacccaggccggtggctggtggaggaagtaagttaggtgaa
ctgattgggaagctccatgagtacctggcggccgctacggaggacaaaaatgaacctact
ttacctggacactggaatggaactacggccaaagaatacctggagcagcaagctcatgcc
cagaccgcagaggagtccagtggaccctccgaagtgggaatgttgtcgtcggctcgttca
agaaggaaaccgactgttgtcaccaaacgcagcgggatgaatgagtcggacgcttcatct
gagagtggagcagaggatgtgatgtctgtccactccagcgaccatgacactaatttccta
cccaaaggaacagtgtttgtgctgccagagccagtctccaatgaagctcgtgatgatttt
cgtggtccagaattccgcagtagacgtgtttacaagcagcacagagatggtggtgacaga
cgcagaggaggatatgagatggagagggtaaactgcacagcttgcggtcagcaggtgaat
catttccagcgtgactcagtctacaggcaccctatgcttaaagttctcatctgcaagagt
tgttttaagtattatatgagtgatgacatcagcaaagattcagaggggatggatgagcaa
tgcaggtggtgtgcagagggaggcagtctgattggctgtgattactgcagtaatgccttt
tgtaagaaatgtgtcctgcgtaacctggggaggaaggagctgtccaccatcctggaggag
gagaggaagtggtactgttatgtgtgcagtcctgagccactggtggagctggtgttggcc
tgcgactctgttctagagagcttagagcaggctcaaaaacgagtctcccgtactgagcca
aactcggtccgggggaaagctaacaagggtggtcgtggtgcgtcatatctgatgggggca
ggaggtggaccggtgccctctgcaggcctttaccagcgaatgcagcggtttgtagatgtt
actacatctttgagtcattccttcaaggcagtcgttcatagagaaagagaggagcatgga
aaccaagaagagaagcaagagagaattgggcagctacggatgttccgtgctgtactggat
gatctgcaagcagctaacagcgcgttacaggaagccctggaccacgagctgactgggtcc
aaacgtggcagtagagttgctttagataataaaacaaaagggaggcgtagaccaaagaag
gcaatgtcatcacagagccctggactcacaaaagagctggtggtcaaacttactcccgta
ccagtcagcccacagcccatcagcagcaactttccttccattaatccatcacctgacaga
caaaagataaaggttggaatgacagatggttcactggaagaaagtgaagcaaaggtggag
atggagaaggggatggagatagagatggagggaatgactgagagaggaggacacgtagag
aattattgtggtaataatgatgacgaagagaaagaggaggaggaggaggaagaggaggag
gaggaggaagaagaggaggaggaggaccaaactgacccaaaaagtttgtctttatcagag
gagaataaacgttctccacgtgtcaaaaccacaccgcgccgtcgtcggacgaacacaaac
ccctctgccgagcatgctggtttagctgaggatgactctgattctgacgaggtgcctgaa
gtgctgctccagactgctgctgccatggctaatagtgaggaagagggtttggtaggtagc
agttgggatggggacgaggtaaaccagcatgtcagaaagcagcggctctttgggctggtg
aaaaccacacctcccgacagaggctctcgtaagcgaaatctcaaagagagatcttcatcg
tcctcgtcatcctcttctgcgtcttcaaggaggggctcccaagaccaggggtctacagtc
agaatgaccagaggaagagcccacaaagttgccaggatgacgggacagagcgggagttca
tcaagtgaggtgggaggaccggaactggagagtggtccgagcagcgactccgacgatcag
aggatcaaaccgctgacagagggcgtcacattgctgggctctggaaatttccagcagtct
tccggtgatgagatggacatccagccaggtccgtctttgcctgtggaggacgatgattta
gaaaatagaattgcgaggcagattctgctggctcagatcaaagctaacctctcctctgat
tctgagctggaggccagcactgatgagcaatcagagagcacgaaaggagaggaggtggtg
aagaagagcaagagcgaatcatctgagacaacagacgatgacgacaattatggctcagaa
tccagtgggtcaaagccagggtcacggcaccgccaccgattgctgcgacatggtctaact
ttatcagaggccgaagcaaaaagtcaaaagcaagggggggagaagaagaaaagagaaagg
gaagtccaagatttaggatgcgttattgtgagcagtgatgaaacaagtgactctgaccta
tgtgaggaactcagcctttcagagtctgaggaaatagggtcccagtcacctactcttaat
gagaagcttcagagtccatcacgcacacctgacaagaccaccgctgctgatgatgatgtg
tctctaaccacagaggaatgtttgaggggcacccctcgagggaggaggcagatcagacgg
cttctagaggtcggtcagctggcccgagagacacagagtgctctgaaagaagaggaggag
cgcaggaggagattagcagagagagaaaaacaaagactggacattgagaggagagaacgg
gaagatgcagactcagaggtcatcttagtttctgagagacaggccacaccattggttctt
gagcaagatgatgtaacgcataagcctatagtgcaagtgcacatgggctttctgaacaaa
cttaaaccacatcagcgagagggtgtgcggttcatgtgggactgctgttgtgagtctgtt
cagaatgtgaagtcatctccgggctccggctgtattctggcccattgcatgggcctgggc
aagacctttcaggtcattgtgttccttcacacggtgctgttatgtaaggagttgccactg
aaaagggctctggtggtgtgtcctctcaacacggtgctgaactggaggagtgagtttgac
cagtggcagaggggcttaagaccacacagactgagggtggcagagctggccacggtgaag
tctgtggctgttcgcgttgagctgttgaatgactggtttacgaatggtggcgtgatgatc
atgggttatgaggtttttcgtattctgacgcacacggatagctcaaaatacagcaaacac
aaagaaagcttccgctcaattctcctggatccaggccctgatctggtggtgtgtgacgag
ggtcatgtccttaggaacgcagactccagcatctcaaaagccatgcgagctctacgtaca
cgtaggagaatcattttgacaggaacaccgcttcaaaacaaccttactgagtatcactgc
atggtaaacttcattaaagagaacctgctgggttctctaaaggagttccgaaaccgtttt
attaatccaatccagaacggccagtgcgcagactccacccctgctgacgtcaggctgatg
aagaatagatcgcacgtcctccatcagatgatgtcaggattcatacagaggcgggactac
ttagttttgatgtcctgtttgccacccaagcgcgagtatgtgctgtcagtcaggatgaca
cctctgcagtgtcgattatacacacactatctgcagacctacacagggaaaggagcaggt
gtgaacagtttgtttcaggatcttcacgttctgagtttgatttggactcatccctggtgt
cttaaacttgctcagctgagcaggaataagggaaaagagcaagagcctgcttctgtcctc
acagggctggatgcaggtttggtgcgagattccgtaaagccaaatggctctgaactgaga
gacacaaatgtcacaggtttagtgggtaatggagagggaaatacagatccagtccccttg
ctcaatcaaaaaccagatgtcacaaacacagccacaacagaaattcctggtggggaagct
ggatttatgggtaatggaccatctgcggactggtatctgccgtttgtaacagcagctgat
gccaaagttctggagcattctgggaaattacagttgctactggagattttacactgggca
gaggaactacaagacaaagtgttggtgttcagtcaatctttgatatcactagatcttatt
gagagtttcctcctatatgcagatgagaccagggggaaggaatgttgtccatacaaagga
aagaaatcgtgggtaagaaataaagattattatcgtttggacggcaacactagtgcttgt
gctcgcaagagatgggctcaagagtttaacaacactaaaaacataagagggaggttgttt
ctgatctccactcgtgcggggtctctgggaatcaatctggtcgctgcaaaccgagttgtg
gtgtttgacgcttgctggaatccgtcatatgacatccagagcatcttcagagtctatcgc
tttgggcagaaaaaaactgtagctgtgtaccgttttctggcccaggggacgatggaacag
aacatttatgagcggcaggttgctaagcagtctctgtcctcccgtgttctggaccagcag
cagattcagagacacttcacacacagtcagctgaatgagctgtaccgcttccagccagac
ctacggcccagtaaacacacagaaacacctgcggatgaggtgttagtccggctgctgcag
agctgtgggcagctcatagtaagttatcatgagcacaactcgttgttagaccaccgggag
gaagaggagctgagcgaggaagagcgcagagcagcctgggatgaataccgtgcagaaaaa
aaggccgctgtacagatctccaatgaagccgccgccagaatcgccaaccgggacctacag
ctcagtcatactcagcaggctgtggcgcttcaaaatttcagctatacaaccaagaacact
cctccaacttcactttctgtcaaacaaggcaatgcccaacattctgctgctcaactcaac
tctgccgccttgcagctgacgcaacccaaagtgatttactcagtttcaaaaacaaaaaca
tag
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