KEGG   Ctenopharyngodon idella (grass carp): 127512249
Entry
127512249         CDS       T08802                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
cide  Ctenopharyngodon idella (grass carp)
Pathway
cide03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:cide00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    127512249
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cide03400]
    127512249
Enzymes [BR:cide01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     127512249
DNA repair and recombination proteins [BR:cide03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     127512249
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 127512249
NCBI-ProteinID: XP_051748942
LinkDB
Position
5:complement(6487524..6503603)
AA seq 1010 aa
MPSFCFGRIVRTISRSSLPTLFRETVFRATLNRHYLQCSRTLTFTWGFASSPSGIFFCVP
QFRQFTLSSCSYFHVSWPEWQREQPDMAEQRYCVEYAKRGTAGCKKCKDKIMKGLVRIGK
IVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITELEGWEELQDEDKDLINKHV
SELAAKTNATPKKKVQAKLNNSGQLSAPLADPTVNAPRKFSGFTATKAGSSSSSPGPSPA
KPTQGSALSAQLCDPNHKDNLLREFRKLCALVAEKSGYNAKTEIIRDFLAKGSGGDKFRG
DLYLTVKLLLPGVVKNVYNLNDKQIVKLFSRILNCSQDEMVQDLEQGDVSETVRMFFEDS
KSFPPAAKSLLTIQEVDASLTRLSQLTKEDDQQAELQDIAKKCTGNDLKCYIRLVKHDLK
INSGAKHVLDAVDPNAYDAFKASRNLGDVIDRVLRNQQEASNGSGPRKILSVEASLMTPV
QPMLAEACKSIEHAMKKCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHF
KEFIPQAFPGGHSMILDAEVLLIDTRSSKPLPFGTLGVHKKAAFQDAQVGLFVFDCIYFN
GVSLMDKPLCERRKFLHDNMVEVPNRILFSEMKHVTRAADLAEMITRVIREGLEGLVLKD
IKGHYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPESR
KWCTVTKCSGGYDDATLARLQKELDVIKIGKDPSKIPGWLKIVKNYYPDFIIRDPEKAPV
WEITGAEFSKSEMHTADGISIRFPRCTRMRDDKDWKTATNLQQLKELYRISKENCDFEIT
AGPSKTSQNDKSSSGGESGGSSPSASHGASSAKTKNGHTPKAKAVKTESSSPAVKRKLPT
ERQDAKKIKTEPAHSNGQSKLKTIQTTDTKNEKTLLDIFTGVKLYLPESVQDFEKLRRYF
LAYDGDLVPEYDSGSATHTLEKPEDDSSAQRVTSNWIWECIRKRRVVPPC
NT seq 3033 nt   +upstreamnt  +downstreamnt
atgcccagtttttgttttggcaggatagtgaggacaataagcagatcatctttgccaaca
ctttttagggaaacagtattcagagcaacactaaatcgtcattatctccagtgctcgagg
actcttacgtttacgtggggctttgcatctagccccagtggcatctttttctgtgtgcca
caatttcgacagtttactctcagctcctgctcttatttccacgtttcttggcctgagtgg
caacgtgaacaaccagacatggcagagcaaagatactgcgtggaatacgccaaacgtggc
actgctgggtgcaagaaatgcaaagacaagatcatgaaggggctggtccggattggcaag
atagtgccaaacccattcagtgagtctgcaggggaaatgaaggagtggtaccatgtcaag
tgcatcttcgagaagctggagagagcgcgtgccaccacaaagaaaatcgaggacatcaca
gagctggagggatgggaggaacttcaggatgaggataaagatctaatcaataaacatgtt
tcagaactggcagccaaaaccaatgcaaccccaaagaagaaagtgcaagcaaagttaaac
aacagtgggcagctgtccgcaccgctagctgatccaacagtcaacgctcctcgcaagttt
tcaggcttcacagctaccaaggctggttcctcttcctccagtcctggaccgtctccagcc
aaacccactcagggcagtgctttatcagctcagctatgtgaccccaaccataaagacaac
ttactgcgggagttccgcaaactctgtgccttagtcgcagagaagtcaggctacaacgcc
aagacagagatcatcagagacttcttagcgaaaggctctggtggagacaaattcagagga
gatttatacctgacagtgaagcttctcctaccaggagtggtgaagaatgtgtacaacctc
aatgacaaacaaattgtcaaacttttcagccgtatattgaattgcagtcaggatgagatg
gtgcaagacttggaacagggagatgtttcagagacagtgcggatgtttttcgaggacagc
aagtctttccctccagcagccaagagtcttttgaccatccaggaggtggatgcttcactg
acccgtctatcccagctcacaaaggaggatgatcagcaggcagagctgcaggacattgct
aaaaaatgtaccggaaatgatctgaagtgctacattcgtttggtcaaacatgatctgaaa
atcaactcgggggcaaagcatgttttggatgctgtggaccctaacgcatatgatgccttc
aaagcctcccgtaaccttggtgacgtaatcgacagggtgctacggaaccagcaggaagcc
tctaatggatcagggccccgaaagatccttagcgtggaggcgtctctgatgacccctgta
cagccaatgctggcagaggcatgtaagtccattgagcatgccatgaagaagtgtcctaat
gggatgtactctgagatcaagtatgatggtgagcgtgtgcaggtccataagaacggtgat
cacttcagttacttcagtcgaagtctcaaaccagtacttccacacaaggttgctcatttt
aaagagttcataccgcaggcatttcctggtggccatagcatgatcctcgatgctgaagtt
cttcttattgacacaaggtctagcaaaccactgccttttgggactcttggagtacacaag
aaagcagctttccaggatgctcaagtgggtctgtttgtgttcgactgcatttattttaat
ggtgtcagtctcatggacaaacctctctgtgaaagaagaaagtttctccatgacaatatg
gtggaagttcctaacaggattcttttctcagaaatgaagcatgtcacgagagctgctgac
ctggcagaaatgatcacacgtgtcatcagagagggactggaggggttggttctgaaggat
atcaaggggcactatgaacccggaaagcgtcactggttgaaggtaaagaaggactatctg
aatgaaggagcaatggcggacacggctgaccttgtggtgcttggagctttctatggcaaa
ggctcaaatggtggaattatgtccagtttcctcatgggctgctatgacccagaatccagg
aagtggtgcactgtgaccaagtgttcaggaggctatgacgacgccacgttagccagactg
cagaaggagttggacgttatcaaaataggcaaggatccaagcaagatcccaggatggttg
aagattgtcaagaactattacccggatttcattatccgtgatccagaaaaagcgccagtg
tgggaaataacaggagcagagttttccaaatcagaaatgcacactgcagatggcatatct
atccgcttcccacgatgcactcgaatgcgtgacgacaaggactggaagacagccactaac
cttcagcagctcaaggagctgtatcgaatctcgaaggagaactgtgattttgagataaca
gctggtccctccaaaactagccaaaatgacaagagctcctcaggaggcgagagtggagga
agctctccctcagcatctcatggagcttcctcagctaagacaaaaaacggtcatacccca
aaagcaaaggcagtgaaaacagaatcatcctctccagcagttaagaggaaactacccaca
gagagacaagatgccaagaagataaaaacagaacctgctcacagcaatggacaaagtaaa
ttgaagaccattcaaacaactgacacaaagaatgaaaagacactactggacattttcaca
ggtgtgaagctctaccttccagagtcagtacaggactttgagaagcttcgacgttacttc
ctagcatacgatggagatctggtgcctgagtatgactccggttcagccacacatacactg
gagaagcccgaggacgacagttcagcccagagggtcacctccaactggatctgggaatgc
atccgaaagaggagggtggttcccccctgctga

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