Ctenopharyngodon idella (grass carp): 127512473
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Entry
127512473 CDS
T08802
Name
(RefSeq) LOW QUALITY PROTEIN: rho guanine nucleotide exchange factor 12
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04270
Vascular smooth muscle contraction
cide04625
C-type lectin receptor signaling pathway
cide04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
127512473
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
127512473
09153 Circulatory system
04270 Vascular smooth muscle contraction
127512473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cide04131
]
127512473
Membrane trafficking [BR:
cide04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
127512473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
127512473
NCBI-ProteinID:
XP_051749347
LinkDB
All DBs
Position
5:7697226..7785124
Genome browser
AA seq
1433 aa
AA seq
DB search
MSGTQSTLAERFPKKASRTGSILSKDHPPDKKPKSDKASVPPSHEFDPTGLVQRCVIIQK
DENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHVEVVKLIKSG
SYVALTVLGRPPGLPQIPLSDGEVEEGPLFSLTSPHSPGPIGPDRSSSSPSPSERKPTPL
SVWAMTEEYSRNPTPKLLKEIQDTKKHIPQHQEQLNKPTGTGQDGSLSPRPGEGEQEDGG
GDLDQPPSWQGDAGTEPLWTNNTTTPVTPSPVPESPCQRQTPCHSPKTTPRDSLNSYPSP
DAEDTPELDSQSNMGSPSSRPVAHIIGAEDEDFDTEQEQMNGQCSCFQSIDLLKSRPAHL
AAFIHHVVSQFDPAPLLCYLYAELYKQTSSKETRRILMDTFFIEKTASLKVTVPESIITD
LERTAHSVNAERKRPEPISEDVHRQYVQQLQDTLLPDIQKNLEDFRQKRSMGLTLAEAEL
ARLDTERMRDRVAPEKERSCAEHIISKIEDVLLTSQATEEDKCSTMQFVILSYMKQLGVK
VKESRGLEHKPKLMNLFPKIKKSIKPEKDGSEEKSKKTRFPSVFPQRRPSRIDASSLSKA
LETRPRLTKPQLPLGTGEQADGSSPPIRGSQSSEGSDGTTALVTSPPYSAPAAQGIDGIS
RESETGGLPSSALARLTEGSIPGDPQDSSSSNTHFDFSPYTLEHLQEEEAETDKTQDTGT
PRSDKRMEPLGSGEVQSEDDQCAEVELEPSNWQTLVSRDVLSTLTPQEIKRQEVINELFY
TERAHVRMMKVLENLFYQPLIRETILPPADIKSIFSNLEEIVQLHMSLTEQMAAVRKKNE
TALIDSLGDDLLSWFSGEEEAKIKRAAGTYCSNQPFALELIKSKQKKDQRFNAFIQEAES
NRNCRRLQLKDIIPVETQRLTKYPLLLENIAKYTEDPEERSKVKRAGECCRKILTHVNQE
VKEAENKQRLEDYQRRLDLSSLKQSENPMIAEFKNLDLTKRKMVHEGPLSWKVNKDKTIE
LYTLLLEDILVLLQRQDEKLILKCHSKNLAGTAETKHIFSPIIKLSTVMVRSVATDNRSF
FVLSMSDNGAQIYELMAQTVSEQKTWQCLITQRADCMKTKLLNIIPLPQADGEREEVELM
NSGVQKLNKDSEPISLGSIQSPEKDDTEVMSTPPSNTNPFETKSDEEDEEEENSLQDQAE
DDEAFEVADLTDRLTLLKQRSRLGIAIDEDEAEAFELQPLRADEALRTLATLRQLLINHM
SSQEDTDRDPERGEQREHMQRTGSQHGPEDGAAVGSTVENGSERGENRGENTQELPSGDT
GFFETSEDCVSAGSYMVLEVYGGSGESSTDDDVQGSSGEPVAGGDSGIDLKKLLSSSSQS
SGGPNLNRQIMTHIRLLQANLQHLKDTEIKYNQLRQRLSEETATDTEENKDKS
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcacacagtccacgcttgctgagaggtttcccaaaaaagcgagcaggacagga
agtattctcagcaaggaccatcccccagacaaaaagcccaaaagcgacaaggcgtcagtc
cccccctcgcatgaatttgaccccacagggcttgtgcagcgttgtgtcatcatccaaaaa
gatgagaatggctttgggctgacagtgagcggcgataaccctgtgtttgtacagcttgta
aaagaggatggagctgccatgcgagctggtgttcagacaggcgaccggatcataaaggtc
aatgggacattagttacacattcaaatcatgtagaagttgtaaagctaataaaatcgggc
tcctatgtggccctaaccgtgctggggagaccgccgggcctgcctcagatccccctctca
gacggtgaggtggaggaggggcctctcttctcgctcacttcccctcactccccggggccc
atcggtccagaccgctcttcttcttcccccagcccctcggagcgcaaaccgacccctctg
tctgtatgggccatgacagaggagtacagcagaaaccctacacctaaactactgaaggaa
atccaggacaccaagaagcacattccacagcaccaggagcagctcaacaagcccactggg
actggacaggatggctcattatctccaaggccaggtgaaggagagcaagaggatggaggg
ggagatttggatcaacctccttcctggcagggtgatgctggaacggagccattgtggacc
aacaataccacgacccctgtcactcctagtcctgtcccggagagcccatgccaaagacag
accccctgccacagcccaaagaccacaccccgagacagcctcaactcctatccttcaccg
gacgccgaagacacacctgaacttgattctcagtcgaatatggggagcccctcctctcgt
ccggttgcacacatcattggtgctgaggacgaagactttgacacagagcaggaacagatg
aatggccagtgtagctgttttcagagcatagacctcctgaaatctcggcctgctcacctg
gcagctttcatccatcatgtggtctctcagtttgaccctgcgccactgctgtgctacctc
tatgctgaactttacaaacagaccagctccaaagagacacgacgaatcctcatggatacc
ttcttcatagaaaaaacagctagcttgaaagtaacagtacccgaatccatcatcactgac
ctggagcggactgcacactcagttaatgcagaacggaagaggccggagcccatctcagaa
gatgtccaccgacagtacgtgcagcagctgcaggacacgcttctacctgacatccagaag
aacctagaagacttcaggcaaaaacgcagtatgggtctgacgctggctgaagcggagtta
gcccgtctggatacggagagaatgagagaccgcgtggctccggaaaaagagcgatcctgt
gcagagcacatcatctctaagatagaggatgtactattgacgtcgcaggccacagaggaa
gataagtgtagcaccatgcaatttgtcatactgtcatatatgaagcagctcggtgtaaaa
gtgaaggagtctcgagggttggagcacaagcccaagctaatgaatcttttccctaagata
aagaaaagtataaagcctgagaaagatggaagtgaggagaaatcaaagaaaacacggttt
cctagcgtcttccctcagagacggccgagcaggattgatgcttcatcactcagcaaggct
ctggagactaggccgcgtctgacaaagcctcagctgccgttgggcactggagagcaggca
gacgggtcgtctcctcctatacggggcagtcagtccagtgagggctcagatggcaccact
gccctggtcacgtcacctccttacagcgctccagcagcacagggcatagacggcatcagc
cgagagtctgaaactggtggacttccctcttctgcactggctagactgacagagggttcc
atcccaggagatccgcaggactcctcctcttcaaacactcactttgacttcagcccctat
acactggagcatctacaggaggaggaagctgagacagacaagacgcaggataccggcacc
cccaggtctgacaagaggatggagccgctgggctctggagaagtgcagagtgaggatgat
cagtgtgctgaggtagagctggagccttctaactggcagacgctggtgagcagagacgtc
ctgtccacacttacccctcaggaaatcaagagacaggaagtcatcaatgagttgttctac
actgagagagcacacgttcgaatgatgaaggttctggagaatttgttttaccagccgctg
atcagagagaccatcctgcctcctgcagacatcaaaagcatcttcagcaaccttgaggag
atcgttcagctgcacatgtctttaacggaacaaatggccgctgttcggaagaagaatgag
actgcactcattgactcattaggagacgatctgctttcctggttcagtggggaagaagag
gcgaagatcaagagagctgcgggcacgtactgcagtaatcagcctttcgccctggaactc
atcaagagcaaacagaagaaagaccagcgcttcaacgccttcattcaggaggcggagagt
aaccgtaattgtcgcaggctgcagttaaaggacattattcctgtggagactcaaagactt
acaaagtatccccttctgctggagaacatcgccaaatacacggaggaccctgaggagaga
agtaaagtgaaacgggctggcgaatgctgtcggaagattctcactcacgtcaatcaggag
gtgaaagaagccgagaacaaacagagattggaggactaccagagacgactggacctgtcc
tcactgaaacagagcgagaaccccatgatagcagagtttaagaacttggacttgactaag
aggaagatggttcatgagggaccgctatcctggaaggtcaacaaagataaaactattgag
ctgtacacattgctgctggaagatatattggtgctacttcaaagacaagatgagaagctg
atcttaaaatgccacagtaagaatctggcgggcaccgctgagaccaaacacatcttcagc
cccatcatcaaactcagcactgtgatggtgcgctcggtcgccaccgacaacaggtcgttc
tttgtgctgtctatgtctgataatggagcccagatctatgagctgatggctcagactgta
tctgagcagaagacgtggcagtgtctgattacacaaagagcagactgcatgaagaccaaa
ctactcaacatcattccattacctcaggctgatggggaacgtgaagaggtcgagttgatg
aactctggtgttcagaaactaaacaaagactctgagcccatttctttagggagcattcag
tctccagaaaaagatgacactgaggtcatgtcaaccccaccttccaacaccaacccattt
gagaccaaatctgatgaggaggatgaagaggaagaaaactcactacaggatcaggctgaa
gatgatgaagcattcgaggtggctgacctgaccgatcgactgacattactgaagcagcgc
tcgaggctgggcatcgccatagatgaggacgaggccgaggcctttgagctccagccactc
agagctgatgaagctctcagaacactggcgacactgaggcagctcctgatcaaccacatg
tccagtcaggaggacacagacagagaccccgagagaggagagcaacgggaacacatgcag
aggacgggttctcagcatgggccggaggacggcgctgcggttgggtccactgttgagaac
ggctcagagaggggcgagaacagaggggagaacacgcaggaactgccctccggagacaca
ggcttctttgagacgtctgaggattgtgtctctgcaggcagttacatggtgctggaggtg
tatggaggctcaggtgagagcagcacagatgatgacgtgcagggcagcagcggggagcca
gtggccgggggagactcaggcattgacttgaagaagctcctctcttcctcctctcagagc
agcggaggaccaaacctcaacagacagatcatgacccacatacgtctactacaggccaac
ctgcagcacctgaaggatacagaaatcaagtataaccagctacgccaaaggctatcagag
gaaacagctactgacacagaggaaaacaaagataaaagttag
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integrated database retrieval system
