Ctenopharyngodon idella (grass carp): 127512507
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Entry
127512507 CDS
T08802
Name
(RefSeq) squamous cell carcinoma antigen recognized by T-cells 3
KO
K22611
squamous cell carcinoma antigen recognized by T-cells 3
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cide03041
]
127512507
03036 Chromosome and associated proteins [BR:
cide03036
]
127512507
Spliceosome [BR:
cide03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
127512507
Chromosome and associated proteins [BR:
cide03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
127512507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
HAT_PRP39_N
HAT_PRP39_C
LSM_int_assoc
Suf
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
RRM_occluded
Lsm_interact
Motif
Other DBs
NCBI-GeneID:
127512507
NCBI-ProteinID:
XP_051749439
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All DBs
Position
5:24087709..24111982
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AA seq
957 aa
AA seq
DB search
MAATGNEEQTLLPDIKEEAEGMEREMESEEEEVEGMGVEHSEEEDEEDTSEDERENEAEI
QRLEEQLSINAFDYNCHVDLIKLLRQEGKLHRLRKARQKMSELFPLTEEIWLDWLKDEIR
LTEDESDREKVYELFERAIKDYVCPEIWLEYVQYSIGGMGAQGGIERVRSIFERALTAVG
LHVTKGASIWEAYREFEIVILSTVQPPPGSVPSQEQQELLNAQLDRIHTLFRRQLAVPLM
DMEGTYVEYSNWADDGVPETVTHQYTRALQQMEKCKHYEEALLVSETPKLAEYQVYIDFE
IKEGDPARVQIIFERALAENCLVPDLWIKYTTYLDRQLKIKDLVLSAHERAVRNCPWTMG
LWKSYLLALERHGADHQTVTDVFEKALNAGFIQATDYVEIWQSYLDYLRRRVDFSKEWSR
ELDELRAAFARSLDYLKQDVEERFSESGDLSCTIMQIWAKIEALHCKNMQKARELWDSIM
TKGNAKYANMWLEYYNLERSYGDATHCRKALHRAVQCTSDYPEHVCDVLLNFERVEGSLE
DWDAAVQKTETKLNRVNEQRARVAEKEALLARQEEEKAEHRRKAKADKKGQKKSQKANRT
GDKRKAEDECEDEWGEDAELPFKRLRGEEDFGCTTTEELMETESGLFGRRAPPQRKTEPP
GFRKNQQGVPEASREPQDVSKEQRKDENSVFVSNLAFNLEDPEGKLRTLFGGCGTVQQVR
LVYTPKGVFRGYCYVQFEDRLAVPEALKLDRQEVDGRPMYVSPCVDKNKNPDFKVFKYKT
SLEKHKIFISGLPYTCTKETLEDLCKEHGTIRAIRLVTNRSGKPKGLAYVEYENEAQASK
AVQKMDGTMLENFTLSVAISNPPSRKMEDKAAPSRILGAVMQRQPQGARGKGRTQISLLP
RSLYRQSAPDAKAENGTISAPHATVTDGVHEGPGTASLDTQTKSLSNEDFARMLLKK
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgacgggtaacgaagaacagacgttgttgccagatatcaaagaggaggctgag
ggcatggagcgagagatggagtcggaggaggaagaagtagaagggatgggagttgagcat
tccgaggaggaagatgaagaggacacgtctgaggacgagcgggaaaatgaagcagagatc
cagcggctggaggagcagctgtcaatcaacgcatttgattacaattgccatgtggacctg
atcaaactcctgaggcaagaagggaagcttcacagactgcgcaaggccaggcagaagatg
agtgaactctttcccctcactgaagagatttggctggactggctgaaggatgaaattcgc
ctaacagaagatgaatcggaccgcgagaaagtctacgagctgtttgagagggctatcaag
gattatgtgtgtccagagatctggttggaatatgtgcagtactccatcgggggaatggga
gcccagggaggcattgagcgggttcggtccatctttgagagggcactgactgcagtgggt
ttacacgtgactaaaggagcttcaatatgggaggcctacagggagtttgagattgttatt
ctctcaacagtacagcctcctcctggcagcgttccatcacaggagcagcaggagctgttg
aacgcccagctcgaccgcatacacacactcttcaggcggcagcttgctgtacctctgatg
gatatggagggaacctacgtggagtactcgaactgggccgatgatggcgtacctgagacg
gttacacaccagtacacacgtgccctgcaacaaatggagaaatgcaaacattacgaggag
gctttgctggtctctgaaactccaaagctggcagagtatcaagtgtacatagatttcgag
ataaaggaaggggatccggcccgtgtccagattatatttgagcgagcgctggcggagaac
tgccttgtgccagacctgtggatcaaatacaccacatatctggaccgtcagttgaaaata
aaagatctagtgttatctgctcatgagcgagccgtcaggaactgtccctggaccatgggc
ctgtggaagagctatctattggctctagagcgacatggggcagaccatcagacagtgacg
gatgtgtttgaaaaggccctgaatgcaggattcatccaggcgactgattatgtagaaata
tggcaatcttatctggactacttgaggagacgtgttgacttcagcaaagaatggagcagg
gagttggacgagctgcgggcagctttcgcacgctcccttgattacctgaaacaggatgta
gaagagaggtttagtgaaagtggagatctgtcctgcacaataatgcagatctgggcaaag
atagaggccttacactgtaagaacatgcagaaggcccgtgaactgtgggacagcataatg
acaaaagggaatgcaaaatatgccaacatgtggctggaatattacaacctggaaaggtca
tatggagatgctactcactgcaggaaggctctacacagagctgtacagtgtacatcagac
taccctgagcatgtgtgtgatgtcctgctcaactttgaaagagtggaaggctctctggaa
gactgggatgctgcagtccaaaaaacagagaccaaactcaacagagtcaatgagcagaga
gcaagagtggctgaaaaagaggctctcctagccagacaagaggaggagaaagccgagcac
aggaggaaagccaaggcagataaaaaaggccaaaagaagagccagaaagcaaacagaacg
ggggataaacggaaagctgaagacgagtgtgaggacgaatggggagaggatgcagagctg
ccgttcaagaggctccgaggggaggaggactttggctgcacaaccacggaggagctcatg
gagacagaaagtgggcttttcggccgacgagctccaccacagcgtaaaactgagccgcct
ggtttccgtaagaaccagcagggagtgcccgaagcatcgcgagaaccccaggacgtgtca
aaggagcagcgcaaagatgaaaatagtgtgtttgtcagtaacttggcctttaatctggag
gaccccgagggcaagctgcgaacattgtttgggggttgtgggactgtacagcaggtgcgg
ctcgtgtatacaccaaaaggtgtgtttagaggttattgctacgtgcagtttgaggaccgg
ctggctgtacctgaggcactgaaactagacaggcaggaggtggatgggcggcccatgtat
gtgtctccttgtgtggacaagaataagaatcctgatttcaaggtttttaagtacaaaaca
tcattggagaagcacaagatctttatctcgggcctgccgtacacctgcactaaagagaca
ctggaggacctctgtaaagaacacggcacaatcagagccatccggctagtcaccaaccgt
tcaggcaaacccaagggtttggcgtatgtggaatatgagaatgaggcacaggcctcaaag
gctgtgcagaagatggacggcaccatgttggagaacttcacactctctgttgctattagc
aaccccccgagcaggaagatggaagataaagcagcacctagtcgaatcctgggggcagta
atgcaaaggcaacctcagggagcaaggggaaaaggacgcactcagatctctctgctgcca
cgctctctgtaccgacagagtgctccagatgccaaagcggagaacgggaccatttctgca
ccacatgccacagtgacagatggagtgcacgaaggacctggaaccgcaagcctggacacg
caaaccaagtccctgtccaatgaggactttgccaggatgctcctcaaaaagtga
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