Ctenopharyngodon idella (grass carp): 127513033
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Entry
127513033 CDS
T08802
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127513033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127513033
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
127513033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_14
TPR_8
TPR_16
TPR_11
TPR_12
TPR_17
TPR_CcmH_CycH
TPR_9
ANAPC3
TPR_MalT
Fis1_TPR_C
ARM_TT21_2nd
ARM_TT21_C
SHPRH_helical-1st
TPR_21
HAT_PRP39_N
Coatomer_E
TPR_15
TPR-S
Motif
Other DBs
NCBI-GeneID:
127513033
NCBI-ProteinID:
XP_051750455
LinkDB
All DBs
Position
5:15339415..15367121
Genome browser
AA seq
1568 aa
AA seq
DB search
MSSKEVKAELKNAREAIKNKEFKEALKHCKAVLKLEKNNYNAWVFIGVAATELQQPDQAQ
IAYRKASELEPEQLLAWQGLANLYEKSDQADFKAELPKIYQRLITLYETSDKAKCFEVSK
KLVEVYQSEKNYLQVARVWLRLIQMKEGEEGVEDSELLELWKEMTRLLQDTVEDQDNETQ
QHLISAFERALQMTVDVPSEAHRSLSQDYIKCLSKLPHEVAKLKEVCDATLSRYPTHSYP
LEALSEHYIKSGDCSEEAVRCFNRLSELDPNNSHAHFGLGIKACQDKKYEDAIKSIGLGL
KRMRSSIIGWYNLALAQLKMHKYSDSATSSSQGLKSSVGNSDVWTQKLQRLRLDALVRTG
RDQDADEALQTLAQISDAKNDPVLLALKGRAHLQKGQTEEAFHVSAELLSSHPGSVEGLT
LKGLTHVAKEQLKQAEESFLEALSRSPDDGELYFLLGHLYWNMGEEIRKDRSKAHTHLLK
AAKLDPYLGSVFRFLGHYYREVAKDQGRARGCYKRAFELDSSDAEAGAATVDLSMEQGDM
DSALTVLQSVTERATPGSAKWAWMRRGLYHLKIGQHQQAIADLQAALRADPQDWVCWECL
GEAYLNRRSFTAALKAFDKAHLLQPTSIYSLYQTAAIKQILGRFKEAASEYRQILEQEEY
VPALKGLGECLLALAKSALDDYLDGRAVDLIQNAIHYLFSAVKQRPDLSCLWKLLGDACT
TCRAVSTNRVKVLVPGALCGMDPPDQSHTLNQRQLLTVGERCIGHALKLMPEAPSLWCDL
GLNYYHQSRLLSCLYPEDDPQPLLEKALQCVKKAIMLDSANHTYWNALGVVAMAKGIEKF
ALAQHSFIKSVKAESNNVAAWTNLGALYLKKGNIELSHEAFKIAQSLEPLYVNCWIGQAL
IAETVGSYDTMDLFRHTTELSTHTEGVKGYAYWVCSTLLDRSNRDSELYLYNIVQMNAVS
AAQVALSKYTERIQTDPDAFIMLGYLNTHLQLRKQATEAYRRAVELLQASPHTDKLSFAL
RGYGRALSDDGQWEEAVRIYSSTSLEELHDLIGLALACFKIGRLPESIQAYEKALAVASS
EKEKACILTALALIQHRLGSMDHAKTLLFKCSMLKEPIPESLQCLCALGLAHGDVTLASA
TLAELLKLGEPVGGAVEEYCLLTCTLLALKGNFSGVHREASRAIHRNPGNPSLWALLSRL
VPQYCPNKASGGAVAGSVACHASLTFGKRALLYSGVNQLASGRHSGEDRRCNALKTIQRA
VLLCPDDPAGWAGLMAACHTENTACLLTGSAPRREDLEKAHMTLVSEKVKGLQGEDGLLA
QALEGWVLQQAVTGLKQSGRYDQAETLCSQVLSVSPEHPVVFLMLRQVQCERLLQSEAGN
SVPPAVLDQLSAAVMANLTSVSAWHWLAEVYRSQGLLAQASVAYRQSLQLASQLGDHNGK
MSSLLRLALLALMPCLAGVCVSEWKDLVLEASTEVLKMGISPVALLFQALLQFSIKMGAR
ETRRLLERIVYASASGSSETIASVARWYLLRHLHAKDDLELIDTLLLKGTAAGDSRLMDF
HRRLYPSS
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtaaagaagtgaaagctgagctgaaaaatgcaagagaagccattaaaaataaa
gagtttaaagaagctttgaaacattgtaaggctgttctcaagcttgagaagaataactat
aatgcctgggtgttcattggagtggcagccacagagctgcagcagccggatcaggcacag
atcgcctacagaaaggcctctgaactggagccagagcaactgctggcatggcagggctta
gcaaatctgtacgaaaaaagtgaccaagcagatttcaaagctgaactgccaaagatttac
cagagacttattacactgtatgaaacctcagacaaagcaaaatgtttcgaagtgagcaag
aagttggtggaagtctatcagtcggagaagaactatttacaggtggccagagtgtggctg
aggttaatccagatgaaggagggagaggaaggggtggaggattcagagctgctggagctg
tggaaggagatgaccagactcctgcaggacactgttgaggatcaggacaatgagactcag
cagcacctgatatcagcatttgaaagagctttgcaaatgacagtagatgtgcccagtgaa
gcccacaggagcctctcacaggattacattaaatgtctttctaagcttcctcatgaggtg
gccaagctaaaagaggtttgtgatgccacactgtcccgctatccaacacactcctaccct
ctagaggccctcagtgagcactacatcaaatcaggtgactgcagtgaagaagctgtccgt
tgtttcaaccgtctctcagaactggatcctaacaactcacacgctcactttggtcttggt
attaaagcttgtcaggataaaaaatatgaggacgccatcaaaagtattggtctgggactg
aagcggatgcgctcgtccatcattgggtggtataatcttgctctggctcaactaaaaatg
cacaaatactctgacagtgccacatcttccagccaagggctgaagtcgagtgtggggaac
tctgatgtttggactcaaaagctgcagaggttgagactagatgctctggtgaggacagga
agagaccaggatgctgatgaagctctgcagacacttgcacagatttcagatgccaaaaat
gacccagtgcttttagcgttgaagggaagagctcacttgcaaaaaggccaaactgaggaa
gcatttcatgtttcagctgagctgcttagctctcacccaggatctgtggagggtctcact
ctgaaggggctgacgcatgttgctaaagaacagctcaaacaagctgaagagagctttctg
gaggctttatccagaagcccagatgatggggagttatatttcttgctggggcacctgtac
tggaacatgggagaggaaatacgaaaggaccgtagcaaagcccatacacatttgctcaag
gctgctaaactggacccgtatcttggttcagtgtttcgtttcctgggtcattactacaga
gaggtggcaaaggatcagggcagagccagaggctgctataagagagcatttgagctggat
tcctctgatgcagaggctggagcggctactgtagacctcagcatggagcagggagacatg
gactcagctctgactgttctgcagtctgtgacagagagagccactcctggctctgctaaa
tgggcctggatgaggagaggtctctaccacctcaagattggacagcaccaacaggccatt
gcagatctgcaggcggcgttgagggctgatcctcaggactgggtgtgctgggaatgttta
ggtgaggcttacctaaaccgcaggagtttcacagctgctctgaaagcctttgataaagct
catctgcttcagcccacctccatctacagcctctatcagacagccgccatcaaacagatc
ctgggccggtttaaagaagctgcctcagagtacagacagatcttagagcaggaggaatat
gtgccagcattgaaaggtctgggtgaatgcttgttagccttggctaaaagtgcactggat
gactatcttgatggaagagctgtagatttaatacagaatgccatccattacctcttcagt
gctgtaaagcaaagaccagacctgtcatgtctgtggaagttacttggtgatgcctgcact
acctgcagagctgtgtccacaaaccgagtcaaagtgctggtacctggagctctatgtgga
atggatccacccgatcagagccatacactgaaccagagacagctcctcactgtaggagaa
aggtgcattggtcatgctttgaaactgatgccggaggcccccagtctgtggtgtgacctc
ggcctgaactactaccaccaatccagactgctcagctgcctgtatcctgaggacgatccc
cagcctctgctggagaaagccctgcagtgtgtgaagaaggcgatcatgctggacagtgct
aatcacacatactggaatgcccttggggtcgtcgccatggcaaagggaatagaaaaattt
gcacttgcccaacacagtttcatcaaatcagtaaaagcggagtcaaataatgtggctgca
tggactaaccttggtgctttgtatctgaagaagggaaacatagagctctctcatgaagct
ttcaagattgctcagtctctagagcccctctatgtgaactgctggatcggacaggccctc
attgctgagaccgttggcagttatgacaccatggaccttttcagacacaccacagaactg
agcactcatactgagggagtgaagggttacgcatactgggtttgctccacgctgctggac
aggagcaacagagactcagagctctacctctacaacatagtccagatgaacgccgtctct
gctgcccaggtggctctgagcaagtacactgagagaattcaaaccgaccctgacgccttc
atcatgctcgggtacctgaacacacacctgcagctgaggaaacaggccactgaggcatat
cgcagagctgtcgagttgcttcaggcgtcccctcacacagacaagctcagctttgctctg
aggggttacggacgtgccctcagtgatgatggacagtgggaagaagcagtgcgtatttat
tcttccacatcactagaggagctgcatgatctcattgggctggcgctcgcctgtttcaaa
atcggtcgcctgccagagagcattcaggcctatgagaaagcccttgcagttgcctctagt
gagaaggaaaaggcctgtatactcactgcactggccctgatacagcacaggctgggcagc
atggatcatgccaaaacacttctcttcaagtgctccatgcttaaagagcccatcccagag
agcctgcagtgtctctgtgctctgggtttggctcacggggatgtgaccctggcaagtgct
acactcgccgagctgctgaaactgggggaacctgtaggaggcgctgtggaggagtactgt
ctgctcacttgcaccctgctggccctgaagggcaactttagcggtgtacatagagaggct
tctagggctatacacaggaacccagggaatccatctctctgggctcttctctccagattg
gtgccacagtactgccccaacaaagccagtggaggcgctgtggccggcagtgtggcatgt
catgccagcttgacatttggaaagagggcgttgctgtacagtggagtgaatcagttggcc
tcaggccgccactctggtgaggacagaagatgcaatgctctgaaaacaatccagagagct
gtgctgctgtgcccagatgatcctgctgggtgggcggggctaatggccgcctgtcacaca
gagaacactgcatgcttactcacaggctccgcccctcgcagagaagatcttgagaaggct
cacatgaccctggtgtctgaaaaagtgaagggcctgcagggagaggacgggctcttggct
caggctctggagggctgggtgctgcagcaggccgtgactggactcaaacagagtggccga
tatgaccaggcagaaactctttgctcccaggttctgagtgtatctccagagcatcctgtg
gtgttcctgatgttgaggcaggttcagtgtgagcgcctcctgcagtctgaggctggtaac
tctgttcctcctgctgtgctggatcagctcagtgctgctgtcatggccaacctcacatct
gtgtccgcctggcattggttggcagaagtttaccgctctcagggtctgctggctcaggcc
tctgtggcttatagacagagtcttcagctggcatctcagctgggagatcacaacgggaag
atgagcagcctgctccgactagccctgctggcacttatgccatgtttggctggtgtttgt
gtctctgagtggaaggatctggtgttggaggccagcactgaagtcttaaaaatgggcatc
tcaccagtagctctgctcttccaagccttactgcagttctccataaaaatgggcgccagg
gagacccgtcgcctgttggagaggattgtttatgcttcagcctcaggcagctctgaaaca
atagcatcagtggcacgttggtacctcctgcgccacctgcacgccaaagatgacctggag
ctgattgataccctgttgttgaagggtacagcagccggagacagcagactgatggatttc
cacagacgcctttacccatctagctga
DBGET
integrated database retrieval system
