Ctenopharyngodon idella (grass carp): 127513223
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Entry
127513223 CDS
T08802
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04510
Focal adhesion
cide04512
ECM-receptor interaction
cide04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127513223
04518 Integrin signaling
127513223
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127513223
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cide00536
]
127513223
Glycosaminoglycan binding proteins [BR:
cide00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127513223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_TEN
fn3
EGF_Teneurin
EGF_Tenascin
EGF_2
Fibrinogen_C
DUF7949
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Fn3_Dep-1_2nd
Pur_ac_phosph_N
EGF
NDNF
Actin
fn3_2
hEGF
FN3_Tor_3rd
Lzipper-MIP1
Motif
Other DBs
NCBI-GeneID:
127513223
NCBI-ProteinID:
XP_051750840
LinkDB
All DBs
Position
5:complement(28742164..28807523)
Genome browser
AA seq
1934 aa
AA seq
DB search
MGMRGLLLASVAVAVLVHLSSAGLVKRVIRHRRESLSPTTENLTLPSPDQPVVFNHVYNI
NVPSGSLCSVDLDSPGTTEMKPKSEQSDQHIEHTMDGENQIVFTHRINIPKQACGCDNHM
PDMKDLLNRLEMLEAEVSSLREQCTSGTSCCGAQVAGEVTTKPYCSGRGNYSTETCSCLC
EPGWKGVNCSEPECPNFCQDQGRCEDGKCVCFEGFGGEDCSIELCPVDCGENGECIDGAC
LCEEGFIGEDCSLTNCLNNCLGRGRCVDDECVCDEPWTGFDCSELICPNDCFDRGRCDNG
TCYCEEGFTGEDCGELTCPKNCNHRGRCVNGQCVCNIGYSGDDCSKLTCLNDCNQRGHCF
NGKCICDPGFEGEDCSILSCPDNCNDRGQCVNGECICDAGYEGDDCSELSCPNNCHDRGR
CVNGKCICKIGFAGEDCSIKTCPNDCHGRGECVDGKCICHDGFAGEHCGIKTCPHHCHGR
GQCVGGICVCHNGFAGEDCSIKTCPNHCHGRGQCVDGKCICHDGFAGEDCSIKTCPNDCH
DHGQCVDGKCICHDGFAGEHCGIKTCPNHCHDRGQCVDGKCVCHHGFAGEDCSIKTCPNH
CHDRGQCVDGKCVCHDGFAGEDCSIKTCPNDCHDRGQCVDGKCVCHDGFAGEDCSIKTCP
NDCHDRGQCVEGKCICHDGFAGEDCSIKTCPNDCHDHGQCVDGKCVCHTGFTGHDCSELT
CPNDCHNRGHCVNGQCVCNSGFTGEDCGTKLCPNNCLDRGYCEDGKCVCFEGYTGVDCSV
LTCPANCNDQGQCLNGMCICDLGFTGDDCSEISPPRDLTVTEVDPETVDLAWVNEMLVTE
YLITYVPTALGGLEMEMRVSGEKKTATIRELEPGIEYLISVFAVLNSKMSVPVSARIATH
LPEPEGLKFKSVKESSVEVEWDPLNIPFDSWNLIFRNTKEEDGEILNSLTPPETTFEQSG
LGPGQEYEVKLEVVKNNTRGPPASKNVVTMIDAPSQVDVRDVTDTTALITWFQPVAQVDG
ISVSYAPTTDLDKNTVELSSMDTQYHLARLNPDTEYEVSLMARRGEMTSFPVYQTFTTDL
DAPKHLKAVEQTDESITLEWKNSIANVLNYRVKYGPLSGGEHRELVFPSGPQDTTQAKIT
GLRPGTEYGMGVTSIKEERESLPATTNAVTDLDAPKDLQVSETTETTLTLVWRRPVAKID
TYELLLVSADGKRTELEVPGAVNTYILSNLNPGMLYTISLTAKRGRKMSAPATLSASTDD
EKPQVGNITISDVSWGSFSVSWELERGEVEGFLIEVSDPDGLSDGQNHTLSNQEFSLAVT
DLSPSTFYRVTLYGLYKGDLLDPVFAEAITEAEPEVEHLLVSDITPHSFKLTWTAPEGVF
DTFTLKVVDPNGLGQPQKISVSGDKRTEAVTGLIEDTEYEIELFGMILGRKFQPILAVAR
TGLGTPKGIRFSDVTDTSATVHWTMPRTRVDSYRVTYVPIQGGSPMTLRVDGGESQAMLP
NLTPGVTYQVTVFAVKGLEESEPGSDRVTTALDKPHGLTAVNITDTEALLLWQPSIATVD
GYVITYSADSVAPVMERVSGNTVEFEMSSLTPATLYTVKVYAVREGAKSAATTTEFTTDV
DAPQNLAASNIQTETAMLTWKPPKADISGYILSFESADGVVKEVVLSPTAMYYSMSQLTA
STEYTVKLQAIAGPKRSRIISTVFTTIGVLYKHPKDCSQALLNGDTSSGLYTIYLRGDEN
QPLQVYCDMTTDGGGWIVFVRRQSGKVEFFRNWKNYTAGFGDLNDEFWLGLSNLHKITSS
GQYELRVDLRDKGESAYAQYDKFSVSEPRTRYKVHVGGYSGTAGDSMTYHHSRPFSTYDH
DNDIAVTNCALSYKGAFWYKNCHRVNIMGRYGDNSHSKGVNWFHWKGHEHSIEFAEMKIR
PANFRNFEGRRKRS
NT seq
5805 nt
NT seq
+upstream
nt +downstream
nt
atggggatgcgaggtctgctactggcctctgtggcagtagctgttttagttcatctctct
agtgctggcctggttaaaagagtaataagacacagaagagaatcattgtcaccaaccact
gagaacttgaccctcccaagtcctgaccagcctgtggttttcaaccatgtgtacaacatc
aacgttccctctggatccctgtgctcggtagacttggattcaccaggaacaacagaaatg
aagccaaaatcggaacaatctgaccagcacatagaacacaccatggacggggagaatcag
attgtttttacacataggattaatattcccaagcaagcttgcggttgtgataaccacatg
cctgacatgaaggacctcctgaacaggctggaaatgctggaagcagaggtatccagtcta
agggagcagtgcaccagtggaacaagctgctgtggtgctcaggttgcaggtgaagtcaca
accaaaccctactgcagtggccgtggcaactacagcactgagacctgcagctgtttgtgt
gagcccggttggaagggagtcaactgctctgagccagagtgcccaaacttctgccaggat
caaggccgttgtgaggatggcaagtgtgtctgctttgagggctttggcggggaggactgc
agtatagagctgtgtcctgtagattgtggtgagaatggagagtgcatcgatggtgcttgc
ctctgcgaggagggcttcatcggtgaagactgcagtttaaccaactgcctaaacaactgc
cttggcagggggcgctgtgtggatgacgaatgtgtatgtgacgagccttggacggggttt
gactgctccgagctcatctgtcctaacgactgcttcgaccgtggacgctgtgacaatgga
acatgctattgtgaagagggctttactggggaggactgtggggagcttacctgccccaaa
aactgcaaccaccgtggcaggtgtgtcaatggacagtgtgtctgcaatattggttacagc
ggagacgactgctccaagctcacctgtctcaatgactgcaatcagagaggtcactgcttc
aatgggaagtgcatatgtgaccccgggttcgagggcgaggactgcagcattctctcctgc
ccggataactgcaatgaccgagggcagtgcgtcaatggtgagtgtatttgtgatgctggg
tatgaaggtgacgactgctcagagctttcctgccccaataactgtcacgatcgtggtcga
tgcgtcaacgggaagtgcatttgcaaaataggctttgctggagaagactgcagcatcaag
acctgtcccaatgactgccatggacgcggagagtgtgtagacggcaagtgcatttgccat
gatggctttgccggagaacattgcggtatcaagacctgcccccatcattgccatggacgt
ggacaatgtgtgggcggcatatgtgtttgccacaatggctttgctggggaagactgcagc
attaaaacctgtcccaatcactgccatggacgtggacagtgtgtggacggcaagtgtatt
tgccatgatggttttgctggagaagactgcagcatcaagacctgccccaatgactgccat
gaccatggacagtgtgtggacggcaagtgtatttgccatgatggttttgctggagaacat
tgcggtatcaagacctgtcccaatcactgccatgaccgtggacagtgtgtggacggcaaa
tgtgtttgccaccatggctttgctggagaagactgcagcatcaagacctgtcccaatcac
tgccatgaccgtggacagtgtgtggacggcaagtgtgtttgccatgatggttttgctgga
gaagactgcagcatcaagacctgccccaatgactgccatgaccgtggacagtgtgtggac
ggcaagtgtgtttgccatgatggttttgctggagaagactgcagcatcaagacctgcccc
aatgactgccatgaccgtggacagtgtgtggagggcaagtgtatttgccatgatggtttt
gctggagaagactgcagcatcaagacctgccccaatgactgccatgaccatggacagtgt
gtggacggcaagtgtgtttgccacactggctttacagggcatgactgcagcgagttgact
tgccccaatgactgccataaccgaggacattgtgtaaatggccagtgcgtgtgtaacagc
gggttcactggggaggactgtggtacaaagttgtgtcccaacaactgtctggaccgtggc
tactgtgaagatggaaagtgtgtctgctttgagggctacactggtgtggactgctctgtt
ctgacctgcccagcaaactgcaatgaccaaggccaatgcctgaatggaatgtgcatatgt
gatttaggcttcactggcgacgactgctctgaaatctccccacccagagaccttacagtg
actgaagtcgacccggaaacagtggacctcgcctgggtcaatgagatgcttgtgacggag
tatcttatcacctatgtgcctacggctcttggcggtttagagatggaaatgagagtctct
ggtgaaaagaagacagccactattagggagcttgagcctggcatagagtacctaatcagt
gtctttgctgtcctgaacagcaagatgagtgtccctgtcagtgccagaatagccacacat
ctccctgaacctgagggtctgaaattcaaatcggttaaagagtcttcagtagaggttgag
tgggaccccttgaacatcccgtttgatagctggaaccttatcttcagaaacacaaaagaa
gaggatggagagattttgaattctctcacccctcctgagaccacctttgagcagtctggt
ctaggacctggacaagagtatgaagttaagcttgaggttgtaaagaacaacacccgtgga
cccccagccagcaagaacgttgtcacaatgattgatgctcccagccaggtggatgtgcgt
gatgtgacggacactacagccctcatcacctggtttcagcctgtcgctcaggtggatggg
atctccgtgtcctatgccccaaccacagatttggacaagaacacagtcgagctttcctcc
atggatacccagtaccatctggctaggctgaatcctgacactgagtatgaggtctctctc
atggcccgcaggggagagatgaccagctttcctgtctatcagaccttcaccacagacctg
gatgccccaaagcacctcaaggcagttgaacagacagatgagagtataactctggaatgg
aaaaacagcatagccaatgtcctcaattaccgagttaaatacggcccactttctggaggg
gagcacagagaactggtcttccccagcggcccgcaagacaccactcaggctaaaatcact
ggccttaggcccgggactgagtatggaatgggagtgacgtccattaaggaagagcgtgag
agtttgcctgcaacgaccaatgctgtgactgatcttgatgcacccaaagaccttcaagta
agtgagaccacagagaccacactgacacttgtttggaggaggccggtcgccaaaatcgac
acctatgagctactgttagtgtccgcggatggcaagagaacggaattggaagtacctggt
gctgtcaatacctacattctgagtaacctgaaccctggcatgctgtacaccatcagcctg
actgccaaaagaggaagaaagatgagtgcgccagccaccctgtcagcatccacagatgat
gagaagcctcaggtgggaaacatcaccatctctgatgtgtcctggggtagcttcagtgtg
tcctgggaactggagagaggagaggttgagggctttctgattgaagtgtctgacccagat
ggcttatctgatggccagaaccacacactatccaaccaggagtttagcctggctgtcact
gacctctcccctagtactttctacagggtcacactgtatgggctgtacaagggagatctc
ttagatcctgtctttgctgaagccatcacagaagctgaacctgaagtggaacatcttttg
gtctcggacatcacaccgcacagctttaaactgacatggacagcaccggagggcgtcttt
gatacattcaccctcaaagtcgtcgatcctaatggtctgggccaacctcagaagattagt
gtatctggagacaagcgaacagaagcagtgacaggtctcattgaagatacggagtatgaa
atcgagctctttggcatgattttgggacggaaattccagcccattttggctgtagctcga
acaggtctaggtacacccaaggggatacgcttttctgatgtgactgacacatcggctact
gttcactggactatgcctcgtacccgtgtagacagctatcgggtcacctatgtacctatt
cagggtggcagccctatgacactgagagtagatggaggagagtctcaagccatgctacct
aatctgacccctggagtgacctaccaggtcactgtctttgctgtgaagggcttggaggag
agtgaaccaggatctgatagggtcacaacagccctggataagccacacggtctgacagca
gtcaacatcaccgacaccgaagccctgctgctgtggcaaccgtccatcgctactgtggac
ggatatgtcatcacttacagcgcagacagtgtggctccagtgatggaaagggtgtctggg
aacactgtggagtttgagatgagctcccttacacccgccaccttatacaccgttaaagtc
tatgcagtccgagagggagccaagagtgctgcaaccaccacagagttcaccacagatgtt
gatgcccctcagaatctggctgccagtaatattcaaacagagactgccatgttgacatgg
aagccaccaaaagcagacatcagcgggtatatccttagctttgagtctgctgatggcgtt
gtcaaggaggttgtcctaagccccacagcaatgtattacagcatgtctcagctgactgcc
tccacagaatacacagtcaaactgcaggccatcgctgggccaaagagaagcagaatcatc
tctacagtcttcaccaccattggagtgctatacaagcaccctaaagactgctcgcaggct
ctgttgaatggagacacatcctcaggcttgtacactatttacctgcgtggagatgagaat
cagcccctgcaggtctactgcgatatgaccaccgatggaggcggctggattgtgtttgtg
agacggcagagtggtaaagtggagtttttcagaaactggaagaactacactgcaggcttt
ggtgacctgaacgatgaattctggctcggtctctctaacctccacaagatcacctcctct
gggcagtatgagctgcgtgtggacctcagagataagggagagtctgcatatgcgcaatat
gacaagttttcagtctctgaaccacgcactcgctacaaagtccatgttggaggatacagc
ggcactgcaggtgactcaatgacgtatcatcacagccgtccattctcaacttatgatcat
gacaacgatatagctgtcaccaactgtgcgttgtcttataagggagctttctggtataaa
aactgtcatcgagtcaatataatgggccgatacggagacaacagtcacagcaagggtgta
aactggttccactggaagggtcatgagcactccatcgagtttgcagagatgaagatcagg
cccgccaacttcaggaactttgagggaaggagaaagcgatcgtaa
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