Ctenopharyngodon idella (grass carp): 127513248
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Entry
127513248 CDS
T08802
Name
(RefSeq) general transcription factor IIH subunit 3 isoform X1
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03022
Basal transcription factors
cide03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127513248
09124 Replication and repair
03420 Nucleotide excision repair
127513248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cide03021
]
127513248
03400 DNA repair and recombination proteins [BR:
cide03400
]
127513248
Transcription machinery [BR:
cide03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127513248
DNA repair and recombination proteins [BR:
cide03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127513248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
127513248
NCBI-ProteinID:
XP_051750874
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All DBs
Position
5:81136..85660
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AA seq
296 aa
AA seq
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MASDDEVNILVLVLDVNPVWWGQQAQREPKFTLSTCLDALMVLANAHLVMSRTNKLAVIA
NLYQESHFLYPSKQWRSGEDISGSTDGKYELLSATNDLFAEEIRKLMERTEVSGTQTDTL
LAVSLSRALCYIHRVSKDVQAGQEVKSRILVIKASEDSTLQYMNFMNVIFAAQKKNILID
ACVLDSDSGLLQQACDITGGLYLRIPQMIALAQYLLWVFLPDADQRSQLLLPPPVHVDYR
AACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKMPLPQVAKTKKKKVKTTN
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggcctcagatgacgaagtcaatattctggtgctggttctggatgttaacccagtttgg
tggggtcagcaggctcagcgcgaaccgaagttcactctttcaacatgtttggacgcttta
atggtcctggcaaatgcccatttagtgatgtcaagaaccaacaaactagccgtcattgca
aacctgtatcaagagagccacttcctgtatcccagtaagcagtggagatcaggggaggac
atatctggaagtactgatggcaaatatgaactcctgtcagccaccaatgatctctttgcg
gaagagattcggaaactcatggagagaacagaggtcagcggcacgcagacagacacgctg
ttggccgtctctctctccagagctctgtgctacattcatcgagtctcgaaggatgtgcaa
gctggacaggaagtgaaatcaaggattttggtgattaaagcttctgaggattctacatta
cagtacatgaacttcatgaatgtgatctttgccgcacagaagaagaatatcctgattgac
gcctgtgtgttggacagcgactccggactattgcagcaggcttgtgacattaccggaggc
ttgtatctcagaattcctcaaatgattgctctggcacagtatttgttgtgggtgttttta
ccggacgcagaccagcgctctcagttgttactgcctcctccggtacacgtggactacaga
gccgcctgcttctgccaccgcaacctcattgaaatcggctacgtgtgttcagtgtgcctg
tcaatattctgtaacttcagtccaatctgcacaacatgcgagactgcgtttaaaatgcca
ctgcctcaggtggctaaaacaaagaagaaaaaggttaaaacgacaaactga
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