Ctenopharyngodon idella (grass carp): 127513431
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Entry
127513431 CDS
T08802
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127513431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cide03041
]
127513431
Spliceosome [BR:
cide03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
127513431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
PRP4
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD_LRWD1
WD40_like
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
127513431
NCBI-ProteinID:
XP_051751151
LinkDB
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Position
5:complement(8553867..8560033)
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AA seq
507 aa
AA seq
DB search
MSDEDEAPVVKRARIFYGSLEEKEKERLSREGTSFSAKDAVKAGIAAGHINISSGESMEM
EERVSERQAEVLAEFERRKRARQITVSTDDVEVKACLRALGEPITLFGEGPAERRERLRN
ILSVLGPDALKKSKKEDEKAKRTQEEYQQTWYHEGPSSLKEARLWLAKYSLPRAVQRLDA
ARAQKEIPESTRTVKQQELHKNLRNVNNFCSQIGDDRPISHCQFSPNSKLLVTASWSGLC
KLWKVPDCTLIRTLRGHNTNVGAISFHPQATLTLEESDVNMASCAVDGSVKLWSLDSDEP
VADIEGHSMRVARVAWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDLHFHP
DGSLAGTGGLDSFARVWDLRTGRCIMFLEGHLKEIYSLNFSPNGFHVATGSGDNTCKVWD
LRQRRCIYTIPAHQNLVSSVKFQPNDGHYLLTGAYDNTAKVWTHPGWSPLKTLAGHEGKV
MGLDLSPDGQLIATCSYDRTFKLWMSE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgaagacgaagctccagttgtgaaaagggccagaatcttctatggaagcctt
gaagaaaaggagaaggagcgtcttagtcgtgaaggaacatctttctctgccaaagatgct
gttaaagccggcattgcggctgggcatattaatatctccagtggtgagtccatggagatg
gaagagcgtgtgagtgagcgacaggctgaagtgctggcagagtttgagcgcagaaaaaga
gccagacaaatcacagtctccactgatgatgtggaggttaaggcctgcctccgagctctt
ggcgagccaatcacgctgtttggggaagggcctgcggagagacgagagagattgaggaac
attctttcagtacttggtcctgatgcattgaagaaatcgaagaaagaggatgaaaaagca
aaacgcactcaagaagagtatcagcagacatggtaccatgaaggaccttcatctctgaag
gaggcacgtctttggttagccaagtattcactgcccagagcagtgcaaaggttagatgct
gcaagggcccaaaaagagattccagagtctacaagaacagttaaacagcaagagcttcac
aagaacctccggaatgtgaacaacttctgcagccaaattggtgatgaccgtccaatatct
cactgccagtttagccccaactctaagctgcttgtgactgcgtcttggagtggcttgtgt
aaattgtggaaagtcccagattgtacactaatacgcacattaagaggtcataataccaac
gtgggagcgattagctttcaccctcaagcaacactcacacttgaggagtcggatgtcaat
atggcctcctgtgctgtggatggatctgttaagctgtggagtttagacagtgatgagcct
gtagcagacattgaggggcactctatgagggtggctcgggtggcctggcatccctctgga
cggtttttgggtacaacttgttatgataactcatggagactttgggatcttgaggtccaa
gaagaaattctgcatcaggagggtcatagtaaaggtgtccatgacctgcacttccaccca
gacggctctctggcaggaactggtggtttggattcatttgcccgtgtctgggacctgcgg
actggtcgttgcatcatgttcctggagggccacctcaaagagatttacagccttaatttc
tcaccaaatggctttcatgtggcaacaggaagtggcgataacacctgcaaagtgtgggac
cttcgtcagaggaggtgtatatacacaatccctgcccatcagaaccttgtgtcctcagtc
aagttccaacctaacgatgggcattatttgctgactggtgcatatgacaacacagcaaaa
gtgtggacccatcctggctggtcacctctgaagactctggcggggcatgaggggaaggtc
atggggcttgacctttcacctgacggacagcttattgcaacctgctcttatgaccgaacc
ttcaaactctggatgtcagaatga
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