Ctenopharyngodon idella (grass carp): 127513662
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Entry
127513662 CDS
T08802
Name
(RefSeq) probable ribonuclease ZC3H12B isoform X1
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127513662
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
127513662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
KH_N4BP1_1st
TNFR_ELAPOR1_6th
UBA_N4BP1_C
zf-CCCH_4
zf-CCCH_2
Omega-toxin
Motif
Other DBs
NCBI-GeneID:
127513662
NCBI-ProteinID:
XP_051751635
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All DBs
Position
5:25053323..25077391
Genome browser
AA seq
1021 aa
AA seq
DB search
MVLELAAPAGAGPALQRCIPHIQRVFRVRVSCSTAESSCNSPIAGSSIIVNIQDGKEEDC
TKAKEYIVSLISPVHKHRERLTLWLQRRLHALRAAIEYESCAVVQVRDHALELQGGHAQV
TAACAMLQRLKMEHRGCRDPQPSPAAAGHDSPEEEEEEDEEAGEEGTSSESEGETRSRSG
SSGGGVDTAGSGEGATGRRRDPLVATKPHRQLCRSSCLDRPSFSQSSTLQELRADETRTD
PSQRALAPPASTAQMPLRQTSDRDYQTKMDFALKLGYSGEQVESVLSKLGSSALINDVLA
ELVRLGNKGDLESQAAVGTASLAPRAVGAKEAVSPEASLEEDPSDTYDNLRPIVIDGSNV
AMSHGNKEVFSCLGIQLAVDWFLEKGHKDITVFVPAWRKEQSRPDAPIKDQEILRKLEKE
KILVFTPSRRVQGRRVVCYDDRFIVKLACDSDGIIVSNDNYRDLQNEKPEWKKFIEERLL
MYSFVNDKFMPPDDPLGRHGPSLENFLRKRPVVPEHKKQPCPYGQYSKSKKCTYGHKCKY
YHPERANQPQRAVADELRAFAKLSAVKTMSEGALAKCGTSGSAAKGDGSSEAKRVAPKRQ
SDPSIRSVACEQEERLCPSRKAEASSVPSLVSALSVPTMPLTKSHAAGALNTRSASSPVP
GSLHFTHSSLEHAGSVQYPPILVTNSQGASVAYGEPFPKYDSVVSDHGYYSMLSDFSTMS
LQDSFCSLEQPEPVGVGGGYPGRAPSMCPEPGRSHSSDSFSSYSGEMYLNSLEGSLDDSM
KGPSAQAQTQPLAQTRLQAFAHGFHHEALTRVQSYGTDEPKPGPRKQSSAHLAPHSQHPV
VGARSSCPGDYPPLSQNVLPSASPSQQGRSLGMTRMDSISDSRLYESNPLRQRRPPLCRE
QHASWDPLPCGNEPYSYGGYGLAGGLMPCCERVMVRSMPEKMEQIWRSPWDSVPPPPPAA
RGPVGESQERHPIPEHQYQTYRNLCNIFPAYVVHSVMEKNPHMTDPQQLAAVIVTKLRSC
H
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggttttggagctcgccgcgcccgccggtgcaggccctgcgctccagcgctgcatcccg
cacatccagcgggttttccgggtcagagtgagctgcagcaccgccgagtccagctgcaac
agccccatcgccggctccagtatcatcgtaaacatccaggacggcaaggaagaagactgc
actaaagctaaagagtacattgtgtcactgatcagtcctgtgcataagcaccgtgagcgc
ttgactctttggctgcagcggcgactgcatgccctacgtgcagctattgagtacgagagc
tgcgccgtggtgcaggtgagggaccatgcactggagcttcagggaggtcatgcacaggta
acagctgcttgcgctatgctgcagcggctgaagatggagcaccgcggctgccgcgacccc
cagccctcgccagctgctgctggccacgactctccagaagaagaggaggaggaggatgaa
gaagctggggaagaggggaccagttcggagagcgaaggagagacgcggtcgcggagcggg
agttctggaggaggtgttgacacagcgggctcaggagaaggagcgacgggaaggaggcgg
gacccgctcgtagcaaccaaacctcacagacagctgtgccgctcctcttgtttggaccgt
cccagcttcagccagagcagcaccttacaagagttacgtgcagatgagacccgcaccgac
ccgtcccagagagcccttgctccacccgcctccacggcccaaatgcccttacgtcaaacc
agcgatcgagattaccaaaccaaaatggactttgctctaaaactgggctactctggagag
caggtggagtctgtgctgagtaaactggggtccagcgcgctaatcaacgatgtattggct
gagctagtgcggctagggaataaaggagatctggagagccaggcagcagtgggaactgcc
agtttagcaccacgggcggtgggagccaaagaagccgtaagccccgaggcatcactggaa
gaagacccatcagacacgtatgacaacctcaggccaattgtgattgatggatccaatgtt
gccatgagccatggaaacaaagaggtgttctcatgcctgggcattcagctggctgttgat
tggttcctggagaagggccataaagatatcacagttttcgtcccagcatggaggaaggaa
cagtcaagacctgatgcaccaatcaaagatcaggagatcctgcgaaaattagagaaggaa
aagatcctcgtcttcacaccttctcgcagagtccaaggccggcgagtggtttgctacgat
gaccgttttatcgtcaagctggcctgcgactccgatgggatcattgtgtccaacgataac
tacagagacctgcagaatgagaaaccggagtggaagaaatttattgaggaacgacttctt
atgtacagcttcgtcaatgacaagtttatgcctcctgatgatcctttaggcagacatgga
cccagtctggaaaattttctccgcaaacgaccagtggtgccagagcacaagaagcagccg
tgtccttatggtcagtacagcaaaagtaagaagtgcacatacggccataagtgcaagtac
taccacccagaaagagccaaccaaccacaacgggctgtcgcagacgagctcagagccttt
gccaaactctccgctgtaaaaacaatgagcgagggggcacttgcaaaatgtgggacctct
ggttctgctgcaaagggagacggtagctcagaggcaaagagagtggcacccaagcgccag
tctgaccccagtatccggtcggttgcctgtgagcaggaagagagactctgtccatcgcgg
aaggccgaggccagttcagtaccatctttagtgtcagcgcttagcgttccaactatgcca
ctgacaaaaagtcacgcagctggcgctctgaatacacgctccgcgagcagccctgttcca
gggtctctgcactttacccacagctcactcgagcatgcgggcagcgtccaatatcccccc
atcctagtcaccaatagccagggcgcatctgtggcttacggagagccgtttcccaagtat
gactctgtggtaagcgaccacggctactattccatgctcagtgacttttccaccatgagc
ctccaagacagtttctgcagtcttgagcagccagaacctgtaggggtgggtggaggatat
cctggcagagctcctagtatgtgcccagaacccggccgaagccattcgtcggactccttc
tcgtcctacagtggagagatgtacctcaactcattggagggcagcctggacgacagcatg
aaagggccatctgcgcaggctcagacgcaacctttggcacaaacacgccttcaagccttt
gctcacggtttccaccatgaggccttgacacgtgtgcagagctacggaacggatgaaccc
aaaccaggacctcggaagcaatcctccgcccaccttgcacctcactcccaacacccagtt
gttggcgctcgatccagctgcccgggagactaccctcctctctcccagaatgtgttgcct
tccgccagtccctcacagcagggtcgatccttaggcatgactcgcatggacagcatctct
gactcacggctctacgagagcaacccactgcgccaacgccgaccccctctttgtcgagag
cagcatgccagctgggaccctttgccatgcggtaacgaaccttacagttacggaggctat
ggtttagcgggaggactcatgccttgttgcgagagggtgatggtccgcagcatgcccgag
aagatggagcagatctggaggtccccgtgggatagcgtgccgcctccaccgcccgctgct
cgtgggccagtgggggaatcccaggagcggcaccctattccagaacaccagtatcaaacc
taccgaaacctctgtaacatcttcccggcatatgtggtccattcagtcatggagaagaac
cctcacatgaccgatccccagcagctggctgccgtcatcgtcactaaactgcgctcttgc
cactaa
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