Ctenopharyngodon idella (grass carp): 127513936
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Entry
127513936 CDS
T08802
Name
(RefSeq) probable ATP-dependent RNA helicase DDX27
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cide03041
]
127513936
03009 Ribosome biogenesis [BR:
cide03009
]
127513936
Enzymes [BR:
cide01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127513936
Spliceosome [BR:
cide03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
127513936
Ribosome biogenesis [BR:
cide03009
]
Eukaryotic type
Pre-60S particles
Helicases
127513936
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
PRK
Cas3-like_C_2
Zip
Motif
Other DBs
NCBI-GeneID:
127513936
NCBI-ProteinID:
XP_051752131
LinkDB
All DBs
Position
6:complement(33082730..33093698)
Genome browser
AA seq
772 aa
AA seq
DB search
MFSDMDLIRTIGEDDEVPEEPDSASDDEADQPIVLSKEKRALKSRGTGDFSADFEFGERD
GVYSGDWAMDDVMAQLKKRKAPTTLDEKIEKVRKKRKIEEKTQKSKKTEAPASKPENEDD
DDDDDDEEENDDENDNDNNEESAGDDDDDEVEEDEFSSGDEEVLKKADTLREKQKKGKRK
TAEIPEAFFEDASQYDESLTFQDMNLSRPLLKAITTMGFKQPTPIQKACVPVGLLGKDIC
ACAATGTGKTAAFMLPVLERLIYKPRETQVTRVLVLVPTRELGIQVHTVARELAQFTSIS
TCLAVGGLDLKSQEAALRAGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDE
YFEEQMKEIIRMCSYQRQTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEF
VRIRPNKEGDREAIVAALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQ
TQRLESLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGK
VGRSVSLVGETERKMLKEIVKKAKTPVKARVIPQEVILKFRDLIEKLEKDVYAVLRLERE
EKEMTRSEAQISSAQKKLTQSAEEKPVPRTWFQTHQERKKDRMTKALQDYDLALRGKKKR
AQFLKEGKRKELTAEERAQFEVLKSQMYAERAAKRDRKQKRARAIPEDKPVQKAPKENKS
RKKTVFDKELTNTSKKTLKQYRAGPSFEDRKRLGLPNKKGGHFKSKAKFRRR
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgttttcagatatggatctgatcagaactattggtgaggatgatgaagtgccagaggaa
ccggattcagcgtctgatgatgaagccgatcagcccatcgtgttgagtaaagagaagcgt
gctctgaagagccgtggcactggagacttcagcgctgattttgagtttggagagcgagac
ggagtgtacagtggtgactgggcgatggacgacgtgatggcgcagctgaagaagaggaaa
gcgcccacgaccctggacgaaaagattgagaaagtgcggaaaaagcgcaaaattgaggag
aaaactcaaaaaagcaagaaaaccgaagctccagcttctaagccagaaaatgaagatgat
gatgatgatgatgatgatgaagaagagaatgatgatgaaaatgacaatgacaacaatgaa
gaatccgctggagatgatgatgatgatgaggtggaggaagatgagttctcatcaggtgat
gaagaggtgctcaaaaaagcagacactttgagagaaaaacagaagaagggcaagagaaaa
acagcagaaattcctgaggcattttttgaagatgcttcccagtatgatgagagtctcacc
ttccaggatatgaatctgtctagacctttactgaaggccatcactactatgggttttaag
cagcccactcctattcagaaagcctgcgtccctgtggggcttctgggaaaagacatctgt
gcatgtgccgccactggcactggtaagacggcggccttcatgttgccggtcctggagcgt
ctgatctacaagccgagagagacgcaggtgacgcgtgtgctggttctggtgccgaccaga
gagctgggcatccaggtgcacaccgtggctcgtgagctggcgcagttcaccagcatcagc
acgtgcctggcagtcggtgggctggacctgaagtctcaggaggcggcgctgagggcgggg
ccagatgtcctgatcgccacaccgggacgactgatcgatcacttgcacaacacgccgtcg
tttgaactcagtcagatcgagatcctcatcttagacgaggccgacaggatgttggacgag
tactttgaggagcagatgaaggagatcatcaggatgtgctcctatcagagacagaccatg
ctgttctcggccaccatgagtgaggaggtgaaggatttggcgtcggtgtcgctcaagcag
ccggtgaggatctttgtgaacagtaatacagatgtggctccgtatctcagacaggagttt
gtgaggatcagacccaacaaagaaggagacagagaggcgattgttgcagctctcctcacc
agaacgttccaggatcacgtgatgctcttcactcagactaagaagcaggctcatcgcatg
cacattctgctgggtttgatggggttaaaggtcggcgagcttcacggaaacctgtcgcag
acgcagagattggagagtctgaggcgttttaaggatgaacagattgatattttggtggcc
acagatgtcgctgccagaggtctggatatagagggagtgaaaactgtgataaacttcacc
atgcccaacacagtgaagcattacgtgcacagggtcggccgaacggctcgcgcggggaaa
gtgggccgctccgtgtctctcgtgggcgagactgagaggaagatgctgaaagagattgtt
aaaaaagccaaaacacccgtcaaagctcgcgtcattcctcaagaggtcattctgaagttt
cgggatctgattgagaagttggagaaggacgtgtacgccgtgttacgcttggagagggag
gaaaaggaaatgacccgctcagaagcgcagatcagttcagctcagaagaagttaacacag
agcgcagaagagaaacctgtgcccaggacgtggttccagacgcaccaggagagaaagaaa
gatcgcatgacgaaggcgctacaggattatgatttggctctgagaggaaagaaaaaacgt
gcacagtttctgaaagagggcaagagaaaagagttaacggctgaggagagagctcagttc
gaggtgctgaagtctcagatgtacgccgaacgagcagctaaacgcgatcgcaagcagaag
agagccagagccattccagaagacaaacccgttcagaaagctccaaaagaaaacaaatct
aggaagaagacagtgtttgacaaggagctcacgaacaccagcaagaaaaccctgaagcag
tacagagccgggccgtccttcgaggacaggaagagactcggccttccaaacaagaaggga
ggacacttcaagtcaaaggccaagttcagaagaaggtga
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