Ctenopharyngodon idella (grass carp): 127514420
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Entry
127514420 CDS
T08802
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04140
Autophagy - animal
cide04148
Efferocytosis
cide05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127514420
04148 Efferocytosis
127514420
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
127514420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cide04131
]
127514420
Membrane trafficking [BR:
cide04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
127514420
Hops complex
127514420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
127514420
NCBI-ProteinID:
XP_051753183
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Position
6:7767817..7779401
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AA seq
835 aa
AA seq
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MAFVTANWNPLGEAFYRKIELYEMGWNLKDGLRDCLVAAAPYGGPIALLKGHSRRSPSAR
PQLEIYSSSGLSLASFQWKSGVVKQLGWTVSDDLLCVQEDGTVLVYDLFGGFKRHFSMGN
EVSQSQVLETKIFHSPYGTGVAILTGALRFTLATNIDDIKLRRLPEIPGLQGVPSCWAVL
TQDRQCKVLVANESHLFILDNTACTPVTPPGLSPDASSIVHICVSFSYKYLALLTDSGHV
WMGTSNLKEKLSEVDTKIKTPPKQMAWCRRPKSQQPSAVVMWDGLLLVVGECKETIKYHL
DDESILVPELDGVRIISGTHHELLQEVPGACEEIFKIASMAPGALLLEAHKEYEKESQKA
DEYLREIKEQSLLSEAVRQCVEAAGHEHEPETQKTLLRAASFGKCFLSNFPPEQFVSMCR
DLRVLNAVRDYTVGIPLTHTQFKQMTVQVLIDRLVYRKLYPLAIEVCRYLKTPEYQGVSR
VLKHWACYKVQQKEESDEVIAKSVSVKLADAAGISYSEIATKAYESGRTELAIKLLEFEP
RSGEQVPLLLKMKKSPLALSKAIESGDTDLVYTVVMYLKNELNRGDFFMMLRNQPVALSL
YRQFCKHQEQETLKDLFNQDDDHEELGNFYVKASYKEQRLEARIGLLQSAVDEYYKAKNE
FSAKATEDEMRLLRFQRKLEEEKGEPLVGFSLHDTMTMLLSVGLHKHAEQLYKDFKVPDK
RFWWLKLKALAEKEDWEELEKFAKSKKSPIGYLPFVEMCIKHHNKYEAKKYVSKVTPEQK
VKAHLAVGDVEGAAEAAIERRNESEISTVLSRCSATTDHILVERLNRAKATAAKK
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgtcacagctaactggaaccctttgggcgaggctttttacagaaagattgaa
ttgtatgagatgggctggaatctgaaagatggtctgagagactgtctggtcgctgcagcg
ccatatgggggtcccatcgctctcctaaaggggcacagccgccgctctcccagtgccaga
cctcagttagaaatctactcttcctcaggactgtctctggccagttttcaatggaagagt
ggagtggtgaagcagttgggttggacggtgtctgatgacctactgtgtgttcaggaggat
ggcactgtgcttgtctatgatctctttggtggcttcaagagacacttcagcatgggcaat
gaagtttctcagagtcaggtgctggagaccaagattttccattcgccatacgggacagga
gttgccatattgacaggtgccttgcgattcactttggccacgaacattgatgacataaaa
ctgaggcggttacctgaaattccaggtctacagggggttccttcatgctgggcagtcctg
actcaggacaggcaatgtaaagtgctggtggccaatgaatctcatctgttcatcttagac
aatacagcctgcacacctgtgactcctccaggtctctctccagacgcatccagtatagtt
cacatatgtgtctcattcagttataagtatctggcactgctcactgactctggtcatgtg
tggatgggtacgtctaatctaaaggagaaactcagcgaggtggacaccaaaatcaaaact
ccccccaaacagatggcctggtgtcgcaggcccaagagtcagcagccgtcggctgtggtc
atgtgggatgggcttctcctagtggtgggagagtgtaaagaaacaattaagtaccacctg
gacgacgaatcgattctcgtgccagaactggacggtgtccggatcatcagtggaacgcac
catgagcttctgcaagaggttccaggtgcgtgtgaggagatctttaaaattgcctcaatg
gctcctggagcattactgctggaggcacataaagaatatgagaaagagagtcagaaggca
gatgagtatctgagagagattaaagaacagagtctgctgagcgaggcagtgaggcagtgt
gtggaggccgctggacatgagcatgaacccgagactcagaaaactctcctgagggcggcc
tcatttgggaagtgctttttgagtaattttcctccagagcagtttgtcagcatgtgtaga
gacctgcgggtgttgaatgcagtacgagactataccgtcggcattcctcttacccacact
caattcaaacagatgaccgtacaggtgcttatcgacagactggtgtatcgtaaactttat
ccactggctattgaggtttgccgctatctaaagactccagaatatcagggagtgagccga
gtactcaaacactgggcctgctacaaggtccagcagaaggaggaatcagatgaagtcata
gcaaaatctgtgagtgtgaagctagctgatgccgcaggaatctcctactctgaaatcgcc
actaaagcatatgagagtggacgcacagagctcgccattaagttgttggagtttgagcct
cgctctggtgagcaggtcccactgttgttaaaaatgaagaagagtcctctggctttgagc
aaagccatcgagagtggagacacagacctcgtgtacacagtggtcatgtacctgaagaat
gagctgaacagaggagacttcttcatgatgttgaggaaccaacctgtggctctgagcctc
tacagacagttctgtaaacatcaagaacaggaaacactgaaagatcttttcaatcaagat
gatgatcatgaagaacttggcaatttctatgtaaaggccagttataaagagcagagactg
gaagctcggattggtcttttacaaagtgccgtggacgagtactacaaagccaagaatgaa
ttttctgccaaggccacagaagatgagatgcgtctgctgcggtttcagaggaagctagag
gaagagaagggtgagccgcttgtgggattctctcttcatgacaccatgaccatgctgctg
tcagtgggactgcacaaacacgccgaacaactttacaaagacttcaaagtgcccgacaag
aggttctggtggctgaagttgaaggctctggctgagaaggaggactgggaagagctggag
aaatttgccaaaagcaaaaagtctcctattggatatctgccatttgttgaaatgtgcatt
aaacaccataacaaatatgaagccaagaaatatgtctctaaagtcacacctgagcagaag
gtcaaagctcacctcgcagtgggggatgtggaaggcgccgcagaggctgccatcgagagg
cgtaatgaatccgagatcagtactgttctgtcacgctgttcagccaccactgatcatatt
ctggtggagcgcctcaaccgtgctaaagccactgctgccaaaaagtga
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