Ctenopharyngodon idella (grass carp): 127514858
Help
Entry
127514858 CDS
T08802
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25 isoform X1
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
127514858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cide04121
]
127514858
Enzymes [BR:
cide01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127514858
Ubiquitin system [BR:
cide04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
127514858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-RING_2
zf-C3HC4
zf-B_box
zf-C3HC4_2
ANCHR-like_BBOX
zf-C3HC4_3
zf-RING_5
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
127514858
NCBI-ProteinID:
XP_051754063
LinkDB
All DBs
Position
6:complement(14203718..14218646)
Genome browser
AA seq
666 aa
AA seq
DB search
MAENMSLLGLEDELTCSICLCLFENPVSLICGHSFCASCLEATWKDRISSLSCPQCRMSF
SSKPELKKNTVLSAVLDAYRIKAGVPEPVKEPFEVKKKDPDAIKCDSCMEAKAVKTCLTC
MASYCEDHVRPHRENVIFRAHQLSDPLPDLMERLCSDHGKLMEFYCIQHQSCICTNCLQS
VHKGCEFITADERRFKQKTDLTDKLNVLEVKTDKNQQVITQMKEQQTKLKELAVTRKRIL
EAEYRQIREVIDRDEKEAMIAIDKEQEKGQSKLVSLMKKFNENVEKMNRTKSEINSLLDQ
SQSLTFLKASVDLPSVVNFEPYNPRMTVEGKEVIAYHSSAVVLKEWITKLMEQPAENRIF
VLKPEFEKSVLGAGNQFPGIPCETPALLPNPRDMSRIRSPSPARAPKTKALGAKQKSKNV
NKELKDPKDRKDQKSNRSRNPPKGINPGFSKSMENLLDLRPKTVDILDISQPLSSPAVQN
SAKRSDLLKYGTILNFDFRTAHKRISLTENNTKATVSDDPSHYPDIPLRFSVCSQVLCTK
GFSQGRHYWEIKMSSNNFCGLGLAYGRIDRKGPTSRLGRNAESWCVEWFNVKLSAWHNSI
ETVLENPNPSRVGVLLDCDQGSATFYNVQDRAYPFHTFVFPFTEAVYPAFWIFSNGSSIS
LCKLNN
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaaatatgtctttactgggtctcgaggacgagttgacatgcagtatctgttta
tgtcttttcgagaacccggtgagtttaatctgtggacacagcttctgcgccagctgtctc
gaagcgacatggaaagacaggatatcatcactgtcctgccctcagtgccgaatgtctttc
agctctaaacccgaactcaagaagaacaccgtcctcagcgcggtgctggatgcctataga
attaaagcaggtgtccctgaacccgttaaagaaccatttgaggtgaaaaagaaagatcca
gatgcaatcaaatgcgacagctgcatggaagccaaagcggtcaaaacttgtctgacatgt
atggcgtcttattgcgaggatcatgtcaggcctcaccgggagaatgtaattttccgggcg
catcagctctctgacccgctgccagacctgatggagcgtctctgttccgatcatggcaaa
ctgatggagttctactgcattcagcaccagagctgcatctgcaccaactgtctgcagtcg
gtgcataaaggttgcgaattcatcaccgcagatgagcggcgctttaaacaaaagactgac
ctgactgacaagctcaacgtcttggaagtcaaaactgacaaaaatcagcaggttatcaca
cagatgaaggagcaacaaacaaaattaaaagaattagctgtaacccgcaaacgtattctt
gaggcagaatacaggcagatcagagaagtgatcgaccgtgatgagaaagaggccatgatt
gctattgataaggaacaggagaaaggtcagagcaaactggtctccttgatgaagaaattt
aatgagaacgttgagaagatgaataggaccaaatctgagatcaacagtctgctggatcag
tctcaatctctcacattcttaaaggcctctgtggatttgccctcagtggtaaattttgag
ccctataaccctcgtatgactgtggaaggtaaagaggtgatagcttaccattcctctgca
gttgtactgaaggaatggatcactaaattaatggagcagccagcagagaacagaatcttt
gtacttaaaccagagtttgaaaaatctgttcttggtgcaggaaaccaattcccgggaatc
ccttgtgagactcctgcactccttccaaatccaagagacatgtcacgtataaggtctccc
agtccagctcgcgctcccaaaaccaaggctctaggagctaaacagaaatccaagaatgtt
aataaagagctgaaagatcccaaagaccgtaaagaccagaagtcaaacagatccaggaat
ccccctaaaggaataaatcctggtttctccaaaagcatggaaaacttgcttgacctcaga
cctaaaactgtagacatacttgacatatctcagcctcttagttcaccagctgtgcaaaac
tctgctaaaaggagtgaccttcttaaatatggcactatcctcaattttgatttcagaaca
gctcacaagcggatttccctgactgaaaacaacaccaaagcgacagtctcggatgaccct
tctcactatccagatatcccccttcgcttttctgtctgttcccaggtgctctgcacaaag
ggtttctcccaaggccgtcattactgggagatcaaaatgagcagtaacaacttctgtgga
ttgggccttgcatacggaagaatcgaccgcaagggtcccactagccgcctggggcgtaat
gcagaatcctggtgtgtggagtggtttaacgtgaagctttcagcatggcacaacagcatc
gagacggtgttggaaaatcccaacccaagccgtgtgggtgtcctgctggactgcgatcag
ggaagtgcaactttctataatgtgcaggaccgggcctaccccttccacacctttgtcttc
cctttcactgaggctgtttatccagctttctggatcttctcaaatggttcttctatctct
ctgtgcaagctcaacaactga
DBGET
integrated database retrieval system
