| Entry |
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| Name |
(RefSeq) helicase with zinc finger domain 2
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| KO |
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| Organism |
cide Ctenopharyngodon idella (grass carp)
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| Brite |
KEGG Orthology (KO) [BR:cide00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:cide03019]
127515005
Enzymes [BR:cide01000]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
127515005
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127515005
Messenger RNA biogenesis [BR:cide03019]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127515005
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
6:complement(34290287..34304461)
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| AA seq |
2665 aa
MALVGNHHKLQTLQEMFDLCLRCKKCCRELRKISYSLNQTIHNCSENILLIRWKGQSSVW
RPVAPLPEFPKPLMYVACRFYTEERGCTKHESRCSFARCPEEASVWNIMKDENLTIPQIV
KEIKRNQRTLQSKPQEKGRSLDCTLCQARFPTDEEFMNHCFTVKHRRLIFEDTSMQWKYR
DPPLTYKDLKLCERSLLCEYGDNCTKAHSQEELREWQKRIKALRKKARDAAELDLLSYQD
RLFEEYRHSENKEMIVSDTFPDVSITCDPDLDSVYVRKKGLQYTWNFTIISKEPLDVIAL
LRREQGATFSLSKNPHEELSYSTSVWFKKNSGQTEYEIPVSFKSDRPGLYEQWVVFDFNT
RPVLQQKLKVRVGDDECKGTSVTCPAAEVPREKPETAKNLEPWSEESLEIIPFVERDKAQ
RELLNTYPLIMKHQSNILIDCENYKQSMHNFLYQEEKVVGELLARLNLRGIVQLKNKLSD
ERFGMKLAYSGELFAAVPLSHPLTPDSPQGFIVKRHAIRSLVRVVKNDNDRRPIYEAEIL
KDTATETQVHLQLSKHCCTDLNLKNEEQCEMEVQFQINRLWFCEMHKAIDDLSDLDKVLP
DLKSSNLCISSQSDTNELNEKQQAAMNFVLGVTDNRSSIPPLLIYGPFGTGKTRTLAKMA
QALLQQPQNKVLICTHTNSSADLYIRGHFHEYVTTEANREAKPLRIKAMESNLRSTDPIT
LQYCHLSKGSNQFEFPDKAVLDSTRIIITTTALARFFHDMNLPENYFSHILIDEASQMLE
CEALMALGLAGKNTRVVLAGDHMQMGPKLFSVRQDKSSEHTLLNRLFYYYQAENTNAAKQ
SRIIFSENYRSTKDIVDFVSTHFYVGKSDVIKAKGDVPSHPHQHALQFHHVRGECCLDST
SMSWFNPEQILSVVGIVQGIMEEWPEEWGDQDPESVCVLSQGRQVLEIRQRLRQLKLPRF
TVENAENVQGKQFRVIVISTVHTKDSLLETDRTCLEFFNDMRVLNTVMTRAQSQIIVVGD
AAALSCHHFGMCWRLWRSYIEYCINKGSAHDFTLDSLKQDLLEISELYRSEDEESSDSES
TTSEIPDIEDPILKELLDESKDINVALTEEGLFPVFQNEQVVSSMKNQITETDEEQLFTS
STIHKCCELVKEAFDRGYAIPLDKPTLRIDIKGRNNIGQAFPGDKVEVEILSEKSDHPTG
RVINILESADTVKEFVCTIERYDNQVMTPINKCITKIYTPFSKDKPDHIAVRNPDSHKIK
SFIKINEEARRKYLFVVKVLKWTKPGSFPLGIVVSVFPKITTLDDGLNVLSIEFQLRRTL
SSSLEKQMQDFQGLSLSEVGRKDFRMLPTFTVDPADSQDLDDAISVRDLGEFYEIGVHIS
DVASFVAKGSELDKYARQLCTAFYPRGKEPINMFPKELSANFFSLIPNHDRRAISLIIQV
DAKTNCIKRRFFFKSIIHSKRRFSYDEAEDILENTRQHSDPLEICLVKAWKFAEVHRRYR
KQEDWCYKQPDEDVTLGRRQSHQMVEELMIMFNHTVAERLLFDGTTRSLTPLRCQDGPKS
EKLTDLFVKNATLIPLSVHFSSRAHEVNNKGLINHTVMPNSQAHISDSEAFPILKSILRC
LKTAAEQKNIYKVIDFVATDDIHPQLLPFAIAFRRLFQKACFLRSNSTHVSRIGHYDLDL
DSYTWASSPVRRYIDVIVQRLLHSLMDKTDVRYTAHDISLSCMEFSRKNDQQSAYERKAN
ALHFALKLSTQSARKVAYIVELNPSGTNFRVSFPLNRSSISENLDIMYRDLQLADQPKFD
ETNNCMILKWVQRIYSFSNPHILAEVKQQNPNSVMAYVPTKTWKCLAAAVREENWDIMIP
LIEELDVTSRIHTRQFQERLRNSTVSEKSDPMHAEHYAELSLRIKQGEAVEVQLGPATAR
GLLTPAVQLFVVHPKFEICLEHVKDPIKCFSKYAFHSSRNSYKTYMDYQEIWKPLCEMES
ASSAVAENESILIEDVALKWEISPQKMLKGFFLLPLDKKSQWSIECDLKNSFLCIRTRIH
KRQSSPLLENTDLMDIPSISWVVHGIITEVKEMDSREPRNLQIDFLINHKPMTTIPEAIF
SEKTRFTLELITKLLPDVRKENAISSLTKANQLVKTIAMGRRINFGEGCTIPEQNTARFE
IDSYLPSGLSHLNNSQTKAIREALTNPFTLIQGPPGTGKTVVGVYIVYWLIKKIQQLPTS
SSQKKRAILYCGPSNKSVDVVAGHLLKLRRDVKPLRVYSDQMEMLEFPYPGCNLKLSRNS
KRGEKPNAELSSIALHHLIRKPGNRYSDQILAFDLKIRRGDQLTGEEKKLYKETLQKARK
HELLQHDVILCTCTAASHHALAEALDLKQIIIDECAMATEPEAFIPLVAHKPEQIVLLGD
HMQLQPVVHCEVVERLGMSKSLFQRYMEKALMLDTQYRMQEDICEFPSKEFYGGKLKTET
QPKPSLFNTTSKQTCIVFGHVEGKEKSLVVSTERGNESSKANVEEAEEVVRIAILLIEAG
IQTKDIAILTPYNAQVANISDSLSDNGICDITVNTIMRSQGSEWKYVIMSTVRSCPKSDI
ERQPTKSWIMKRLGFIMDPHQVNVGITRAQEGLCIIGNKNLLRCSVLWRKLLDHYQEKGC
VVNPARNIQVRKPNRTLGIKRIARK |
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| NT seq |
7998 nt +upstreamnt +downstreamnt
atggctcttgtaggaaaccatcacaaacttcagacattacaagagatgttcgatctgtgt
ctgagatgtaaaaagtgctgtagagaactccgtaagatttcatactcccttaaccagacc
atccataactgctcagaaaacatcttactgatcaggtggaaaggtcaaagttcagtatgg
aggccagttgctcccctgccagaatttcccaaacctttaatgtatgttgcttgccggttc
tacactgaagaacgtggatgcacgaagcatgaaagtagatgttccttcgccaggtgccca
gaggaagcatcggtgtggaacatcatgaaggatgaaaatctgacaattcctcagattgtg
aaagagatcaaacgaaaccaaaggacactgcagtcaaagcctcaagagaaaggaagatcg
ttagactgcacattatgtcaggcgcgcttcccgacagatgaggaattcatgaaccactgt
ttcacggtgaagcacaggagactgatctttgaagatacctctatgcagtggaagtaccgt
gatccgccactaacatacaaggacctgaaactgtgtgaaagatccctgttatgtgagtat
ggagataactgcacaaaggcacacagtcaagaggaacttcgtgaatggcaaaaaagaatc
aaggctttacggaagaaagccagggatgcagccgagctggatttactgtcctatcaggac
aggctttttgaggaatacaggcacagcgagaacaaggaaatgattgtcagcgacactttt
cctgatgtttccatcacctgtgacccagatttagacagcgtctatgtaaggaaaaaggga
ttacagtatacatggaatttcaccattatttccaaggaacctctagatgtgattgcttta
ctcagacgggaacagggggcgacattcagcctcagcaaaaacccccatgaggaactgtca
tattccactagtgtttggtttaaaaagaatagtggccaaacagagtatgaaattccagtg
tccttcaaatctgaccgaccaggcctgtatgagcagtgggtagtttttgacttcaatacg
agacccgtactgcaacaaaaactcaaggtcagagttggagatgacgagtgtaagggaaca
tcagtcacatgtccagcagctgaggttcctcgagaaaaaccagagactgccaagaatctt
gagccctggagtgaggaaagcctggaaatcattccttttgttgaaagagataaggcacag
agagagctgctaaacacatacccgctcatcatgaaacaccagtcaaacattttgattgac
tgtgagaattacaaacagagcatgcacaattttttataccaggaggaaaaggtagtaggt
gaactgcttgccaggctgaatctacgagggattgtgcagttgaaaaataaactgtctgat
gaacggtttggaatgaaattggcttattcaggggaactttttgctgctgtgcctttgtct
cacccactcactcctgattcccctcaaggtttcatagtgaaaagacacgctatcagatct
cttgttcgtgtcgtgaaaaacgataacgatcgtagacctatttacgaggctgaaattctg
aaagacactgccactgagacacaagtacatctacagctttccaaacactgctgcactgat
cttaatctgaagaatgaagagcaatgtgagatggaagtccagttccaaataaatcgtcta
tggttctgtgagatgcacaaggccattgatgatctctccgacttggacaaagttttgcct
gatctgaaaagcagcaacttatgtatttcttcccagtcagataccaatgagttaaatgag
aagcagcaagcagcaatgaactttgtcctgggtgtaacagacaacagaagcagtatccca
cctttgttgatttatggaccttttggaacagggaaaactcgaacccttgcaaagatggcc
caggctcttctgcagcaaccacagaacaaagtcctgatttgcacacacacaaacagttca
gctgatctttatataagaggtcatttccatgaatatgtaacaactgaagccaatcgtgaa
gccaaacctttgagaatcaaggcaatggaaagcaatctcagatccactgatcctatcact
ctgcagtactgccatttatccaaaggcagcaatcaatttgagtttcctgataaagctgtt
ctggattccacaagaatcatcataacaacaactgcgctggctcgtttcttccatgacatg
aacctccctgaaaactacttcagccacattctgattgatgaagcttctcagatgttggag
tgtgaggctcttatggcattgggcttggctggcaaaaatacacgtgttgttttagcagga
gatcacatgcagatgggacccaagctcttctctgtgagacaagacaaaagctcagaacat
accctgctcaatcgcctcttctattactaccaagctgaaaacactaatgctgccaaacag
agtcgaatcattttcagtgaaaactaccgttccacaaaagacattgtggattttgtgtca
acacatttttacgtgggaaagagtgatgtgatcaaggctaaaggagatgtgccttctcat
ccacaccagcatgccttgcagttccatcatgtaagaggagaatgctgtttggactcaaca
agcatgtcctggttcaatccagaacaaattctaagtgttgttggcattgtgcaaggaata
atggaggaatggcctgaggagtggggtgatcaagatccagaatcagtctgtgtcctttct
caaggcagacaggtgttggaaatacggcaaagactgcgtcagcttaaactgccccgtttc
actgtggagaatgctgaaaatgtgcaaggaaaacaattcagagtaatcgtgatttccact
gtgcacacgaaggacagcctattggagacagaccggacctgtcttgagtttttcaatgat
atgcgagtgctgaatactgttatgacaagagcccaatcccaaataattgtggttggagat
gcagctgctctttcttgccatcactttggcatgtgctggagactatggagatcttacata
gaatattgcatcaacaagggaagtgcccatgactttaccttggattctttgaaacaagat
ctccttgagatatctgagctctacagaagtgaagatgaagaaagcagtgatagtgaatca
actacatctgaaataccagacatagaagacccaatacttaaagagcttcttgatgagagc
aaagacatcaatgttgcattgacagaggaaggtttgtttccagtttttcaaaatgagcaa
gttgtcagcagtatgaaaaaccaaattacagaaacagacgaagagcaattgtttactagc
tctaccatccacaaatgctgtgagctggtcaaagaggcttttgaccgtggttatgcaata
ccacttgataagcccactctaagaatcgatatcaagggtagaaataatatcggacaggca
ttccctggagacaaagtagaagtggagatcctgagtgagaaatcagatcatcctacggga
agagtaatcaacattcttgaaagtgcagatactgtcaaggaatttgtctgcaccattgaa
agatatgacaatcaagtgatgacacccatcaacaaatgtatcaccaaaatctacacacca
ttttcaaaggacaaaccagaccacattgctgtaagaaatcctgacagccacaaaataaag
agtttcatcaaaataaatgaggaagcacgtagaaaatacctctttgttgtcaaagtcctt
aagtggacaaagcctggcagttttcccttggggattgttgtgagtgtgtttccaaaaata
acaactttagatgatggattgaatgtgctcagcatagagttccagttgaggaggactctt
tcttcgtctttggaaaaacagatgcaagactttcaaggtctcagtttatctgaagttgga
cgaaaagattttcgcatgctgccaacattcaccgttgatcctgccgattcacaagacctt
gatgatgcaatcagtgtacgggatttaggcgagttctacgaaataggagttcacatttct
gatgttgcaagctttgtggctaaaggcagtgaactggacaaatatgcaagacagctgtgc
actgcattctatccacgtgggaaggagccaattaatatgttccctaaagaattgagtgcc
aatttcttcagtttaatccctaaccatgacagacgagccatctccttgataatacaagta
gatgcaaaaacaaactgcataaagagaagatttttcttcaagtctatcattcactccaag
agaaggttttcctatgatgaggctgaggacatccttgaaaacacccgtcagcattctgac
ccacttgaaatctgccttgtgaaagcatggaagtttgctgaagttcacaggagatacagg
aaacaggaagactggtgctacaaacagccagatgaggacgtaacccttggaagaagacaa
tctcaccaaatggtggaagagctgatgatcatgtttaaccacacagttgctgaacgcctt
ctgtttgatggaacaacaaggagtctaactccactgagatgtcaggacgggccaaaaagt
gaaaagcttactgacctttttgtcaaaaatgccaccttgattccactatctgttcacttc
tcaagtcgagctcatgaagtgaataacaaaggtttgatcaaccacacagtcatgccaaac
tctcaggctcacatttctgattctgaagccttccctatactaaaatcgattttgagatgc
ctgaagacagcagcagagcagaaaaatatctacaaagtaattgactttgttgcaactgat
gacattcacccccaacttctcccttttgctattgcatttaggagactgtttcaaaaagca
tgttttctgcgctcaaactcaacacatgtctcaagaattgggcactatgatttggatctt
gacagctatacatgggcctcatctccagtccgccggtacatagatgtcattgtacagcgc
cttcttcattctctgatggacaagacagacgttaggtacacagctcatgacattagcctg
tcttgtatggaattttccaggaaaaatgaccaacagtcagcatatgagaggaaagcgaat
gctctacattttgcattaaaactgtcgacccaaagtgcaaggaaggtggcatacattgtg
gaactcaatccgtcagggacaaacttcagagtatccttcccacttaacagaagctctata
tcagaaaacttagacattatgtacagggatcttcagctggcagatcaaccaaagtttgat
gaaacaaacaactgcatgatcttaaaatgggtgcaaaggatatattcattctccaatcct
cacatccttgctgaagtgaaacaacaaaatccaaactcagtcatggcctatgtccctaca
aagacctggaaatgcctagcagctgctgttagagaagaaaattgggacataatgattccc
ctgattgaggagcttgatgttacctcaagaatccatacaagacaattccaggaaagactg
agaaactctacagtttcagaaaaatctgatcccatgcacgctgagcattatgccgaactg
tcgctgagaataaagcaaggtgaagcagtcgaggtgcagctaggtccagcaacagctcga
ggattactgacacctgcggttcagttgtttgttgtgcatccaaaatttgagatttgcttg
gagcatgtgaaggatccaatcaagtgtttttcaaaatatgcgttccactcatcaaggaat
tcatacaagacatacatggattatcaggaaatatggaaacctttgtgtgaaatggagtca
gcctccagtgctgtggctgaaaatgagagcattcttattgaagatgtagccttgaaatgg
gagatctctcctcaaaaaatgcttaaaggtttttttctcctcccacttgacaagaaatct
cagtggtctattgaatgtgacctcaagaacagtttcctctgcattcgaactcggattcac
aaaagacagagtagtccccttctggaaaacacagatctcatggatattccttctatcagt
tgggtggtccatggcataataacagaagttaaagaaatggactccagagaaccaaggaat
ttacaaattgattttctgataaaccacaagcctatgacaactattccagaagcaatattc
tctgagaagacaagattcactctggagctgattacaaagcttctgccagacgtacgaaaa
gagaatgcgattagcagtctaaccaaagctaaccaacttgtaaaaactattgccatgggc
aggagaatcaactttggagaaggatgtacaattccagagcagaacacagccagatttgag
attgacagttatctcccttctgggctttcccatctaaacaacagtcaaactaaagctata
agagaagcactgaccaacccgttcactcttatccaaggaccaccagggactggcaaaact
gtcgttggtgtctatattgtgtactggttgatcaagaaaatccaacagcttcctacctcc
agttcacagaagaagagagctattctgtactgtggaccttcaaataaatctgttgatgtt
gtagcaggtcatctcctaaaacttagaagagacgttaaacctctcagagtctacagtgat
cagatggagatgttggagtttccttacccaggctgcaacctgaagctgtcacgcaattct
aaaagaggggaaaaaccaaacgcggaactcagttccattgcattacaccacctgattcga
aagcctggaaacagatattctgatcaaatacttgcatttgatttgaaaatcagaagagga
gatcaactcaccggagaagaaaaaaaactctacaaagaaaccctccaaaaggctcgcaaa
cacgaattattgcagcacgatgtcatcttgtgcacctgcactgcagcctcacaccatgcc
ttagctgaagccctcgacttaaaacagatcatcattgatgaatgtgccatggcaactgaa
cctgaagcctttattcccctagtggctcataagcctgagcagattgttcttctgggcgat
catatgcagctgcaacctgtagtgcactgtgaagtggtggagcgattgggaatgagcaaa
tctcttttccagcgctacatggagaaagcactcatgcttgacactcagtacagaatgcaa
gaagacatttgtgaatttccatctaaggagttctatggaggaaagttaaaaaccgaaaca
caacccaaaccaagtcttttcaatactacatcaaagcaaacatgcatagtctttggtcat
gttgaaggaaaggagaaaagtctggtggtctcgactgaacgtgggaatgaaagttcaaag
gcaaatgtggaagaagcagaagaagtggtgcggatcgccattcttttgattgaggctggg
atacagacaaaggacatcgccattctcacgccatataatgctcaagttgcgaatattagt
gactccctgtccgataatggtatatgtgacatcacagtcaacaccatcatgaggagtcaa
ggaagtgagtggaaatatgtcatcatgtcaactgtgcgctcatgcccaaagtctgatata
gagagacaaccaacgaaatcctggattatgaaacgacttggattcatcatggacccacac
caagttaacgtgggcatcaccagggcacaagaaggactgtgcatcattggtaataagaac
ttgctgcgctgcagtgttttgtggagaaaacttctggatcattatcaggagaaaggatgt
gtagtgaatcctgcccggaacatccaggttcgcaaacccaacagaactctgggaattaag
agaattgctagaaaatga |
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