Ctenopharyngodon idella (grass carp): 127515737
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Entry
127515737 CDS
T08802
Name
(RefSeq) LOW QUALITY PROTEIN: DIS3-like exonuclease 1
KO
K18681
DIS3-like exonuclease 1 [EC:3.1.13.-]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127515737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127515737
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
127515737
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
CSD2
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
C2_SHIP1-2_2nd
Motif
Other DBs
NCBI-GeneID:
127515737
NCBI-ProteinID:
XP_051755663
LinkDB
All DBs
Position
7:complement(9075852..9087439)
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AA seq
1062 aa
AA seq
DB search
MDDPVIIKTEKVLHLNSSKGRKVRVVREHYVRQQVPCGNSFCQANCHNVGKVLSSDVTHY
VVPDVGVVRDFLEILEFRELQGIVLTQTAYQTVQHTRGRRHYNRLRALLKDPRHDCVLFA
NEFQQYSYCPRDKGESQDKWNTRKVYNAAVWYYNHLAGLRPVVMITEDTDTILEYSALNS
GVYVISTQEYLLSFWPDLQAAHDLYNSIAQTLQERESEGAEKVYGEHLPAEVLEAGIKSG
RYIQGILSVNKHRAQHEAFVRYEGSASKNTELNSDVLISGAKHRNRAVHGDMVVIELLPR
NEWKGRTMVLTEGQGEERVQEDIQSQPLPTGRVVGILQRNWRDYVVTFPPLEEVQSQSRN
SQKILVIPWDYRIPKIRISTQQAEALQDQRVIVRLDSWESTSVYPNGHCVRVLGKAGELE
TEIQTILVENCIHVPPFSEAQLREMPVNTEENPWQMDSSEVSSRRDLRETHLVFSIDPKG
CEDVDDTLSVRTLPGGKRLELGVHIADVTHFVREGSLTDLEARSRATTYYLADRRYDMLP
AVLSADLCSLLGGVDRYAMSVLWELDAESLDVCTVWYGRTLIRSSYQLHYELAQSLLNGD
EVEVPELAELKGSQRDQKLAELMQALETLTRVARHLRAQRDKGGALELEGXEVRAQLDEE
KNITALVPKQPLEVHETVAECMIHANHWVARKIQESFPHQALLRHHPPPKQEFFSQLIDS
AKARGFSIDTRSNRALADSLERAVDPQDPLVNRMLRMMATQAMSNALYFSTGACPEEQYY
HYGLALDRYTHFTSPIRRYADVLVHRLLMAAVQLEKEGSLSKALDSNKELEELAQHINNK
NRAAQHAQKQSTELFQCLYFRDKDSSTDERCVADAVIYAIRANGFLAFVPQYGVKGAVYL
KDREGQVVSVDGNGRCEWKTGILQRYPDRINTCTSTGTHTFHLFDHVTVRISVEPSRCHA
DGLCLQLISNKPHCAAQPESQPAGRGRSELVQEVVRWAEEASLQAEEEKGRKPKLSREER
KFRQSRTPNLYVLLQEISELALLDLSLCQIRNSEEQTSTASS
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atggatgatccggtcataatcaaaaccgagaaggttttacatttgaacagctcaaagggt
agaaaggtccgtgtggttcgggagcattatgtgaggcagcaggtgccgtgtgggaactcg
ttctgtcaagcgaactgtcacaacgttgggaaggtgctgtctagtgatgtgacccactat
gtggttccggatgtgggagtagttcgggatttcctggagattctggagttcagggagctg
cagggtatcgttttgacccagacagcctaccagactgttcagcacacgcgtggacgcagg
cactataacagactgcgtgctttactgaaggatcctcgccacgattgcgtactgtttgca
aatgagtttcagcaatattcctactgtcccagagacaagggtgagtctcaagacaaatgg
aatacgagaaaagtgtacaatgcagcagtttggtactataatcatctggctggactccgg
ccagtggtcatgattacagaagatactgacactattttagaatatagtgccttaaacagc
ggagtgtatgtcatctcaactcaggagtacctgttaagtttctggccggacctgcaggcc
gcccatgatctgtacaactccattgctcagacccttcaagagcgagagagtgagggagca
gagaaggtgtacggtgaacacctgcctgcggaggtgcttgaggctggtataaaatctggc
aggtacatccagggcatcctcagcgtgaacaaacatcgggcacagcatgaagcctttgtc
cgttatgagggttcagccagcaaaaatacagagctaaacagcgatgtgctgatcagtgga
gcgaagcaccgtaaccgagcagtgcatggagatatggttgtcatagagcttttgccccgt
aatgagtggaagggcaggactatggtgctaacagaaggtcagggggaggagcgggtacag
gaggacatccagagtcagcccttgcccacaggcagggtggtgggtattctgcagaggaac
tggagagactacgttgtgacatttcctcctctcgaggaggtgcagtctcagagccgaaat
tcacagaagattctggttattccatgggactaccgcatacctaaaatccgtatcagcaca
cagcaggctgaggcactgcaggaccaaagagtaattgtgcgtctggattcatgggagagt
acttctgtctacccaaatggccattgtgtgagggttctgggaaaagcaggtgagctggag
actgagattcagaccatcctggtggagaactgcatccatgtgccaccattctcagaggca
cagttgcgagagatgccagttaacacagaggagaacccatggcagatggacagcagtgag
gtgtcttctcgacgggacctgagagagacgcatctagtgttcagtatcgatcctaagggc
tgtgaggacgtggatgacaccttgtctgtacggactttgcctgggggtaaacggttagag
ctgggtgtccacattgccgatgtcactcactttgtcagggagggctctcttacagaccta
gaggcacggtccagggcaaccacttactaccttgctgaccggaggtatgacatgctgcca
gcagtgttgagtgctgacctgtgctccctccttggaggagtggaccgatatgccatgagt
gtgttgtgggagctggatgctgagtctctggatgtgtgtacagtttggtacggtcgcact
cttatccgctcctcctatcagcttcactatgagctggcccagagcctgctgaatggcgat
gaggtcgaggtgcctgagctagccgagctcaagggttcacagcgggaccaaaaactagct
gagctcatgcaggccctggagactctgacgagggtagccaggcaccttcgggcacagaga
gataagggtggtgctctggagttggaggggntggaggttagggctcagctggatgaggag
aagaacattacagcccttgtgcctaaacagcctttggaggttcatgagactgtggcagag
tgcatgatccatgccaaccactgggtggcacgcaagatacaggaaagctttccacatcaa
gcacttctgcgtcatcacccaccacccaaacaggagttcttcagtcagctaatcgacagt
gccaaggcccgtggcttcagtattgatacaaggtcaaacagggctctggctgattctctg
gagcgcgctgtggatcctcaggaccccctggtgaacaggatgttgagaatgatggccaca
caggcgatgtctaatgctctttacttctctacaggagcctgtccagaggaacagtactat
cactatggtcttgcactggatcgatacactcactttacctctccaatcagacgctacgct
gatgtattagttcaccggctgctcatggctgccgttcagctggagaaggaaggatcacta
agcaaagctttggacagtaacaaagaacttgaggagctggctcaacatatcaacaataaa
aacagagcagcgcagcacgcacagaagcagtccacggagctcttccagtgcctctacttc
agagacaaagactccagcacagatgagcgctgtgtggctgatgctgtgatctacgccatc
cgagctaatggttttcttgccttcgtaccacagtatggtgtgaagggagccgtgtacctt
aaggatcgagagggtcaggtggtcagtgttgatggaaatggaagatgtgagtggaagact
gggatattacagagataccctgacaggatcaacacctgcaccagcactggaactcatacc
tttcacctcttcgaccacgttacagtccgtatctctgtagaaccgtctcgttgccatgcc
gacggcttgtgtctgcagcttatcagcaacaagccccattgcgctgcgcaacctgagtcc
cagccagctggtcgaggtcggtctgagctggttcaggaagtcgtgcgctgggcagaagag
gcctctctccaggcagaggaagagaaagggaggaagcccaaactgagcagggaggagagg
aagttcaggcagagcagaacaccaaacctctatgtcctgttacaggagatcagtgaactt
gccctgctggatctgtctttatgccaaatcagaaattcagaggaacagacttctactgca
tcttcttag
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