Ctenopharyngodon idella (grass carp): 127515746
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Entry
127515746 CDS
T08802
Name
(RefSeq) aprataxin isoform X1
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
127515746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cide03400
]
127515746
Enzymes [BR:
cide01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
127515746
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
127515746
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
127515746
DNA repair and recombination proteins [BR:
cide03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
127515746
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
127515746
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
FHA_2
zf-C2HE
HIT
FHA
Motif
Other DBs
NCBI-GeneID:
127515746
NCBI-ProteinID:
XP_051755680
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Position
1:complement(40761994..40765597)
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AA seq
344 aa
AA seq
DB search
MPLCLLVSEDDPHKPIQLPHQQAVTLGRGPETKIKDKKCSREQVEFRADCNRGFVSVKQL
GVNPTNVDNVVVGRGNQVTIKPGQRLYMVNQMYPYTVKFTEQTFTPRSAAEGSKASKRSH
QMSCEGNGEKIKSPAKTTSTSSSRTSDTSPPPKKTPPPGPDKSESAGHWSQGLKVSMQDP
KMQVYKDDTVVVIKDKYPKARYHWLVLPWDSISSLKALRSEHVDLLKHMQRVGDQMVQQC
RDAHKLRFRLGYHAVPSMSHVHLHVISQDFDSPCLKNKKHWNSFTTDYFVESQDVVTMLE
RDGKVTVKDGASELLKLPLRCHACHKEQPTIPKLKEHLKTHMPA
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgccactgtgcttactagtaagtgaagatgatccacataaacccattcagcttcctcat
caacaagctgtgactttgggtcgaggaccagaaactaagataaaagacaaaaagtgctca
agagaacaagttgaattcagagctgattgcaacagaggatttgtctctgttaaacagttg
ggtgtgaatcctacaaatgtggacaatgtggttgtgggcagaggaaatcaggtgaccata
aagccgggccagagactttacatggtcaaccagatgtatccatatacagtgaagttcacc
gagcagacgttcacacccagatccgctgcagaggggagcaaagcctccaaaagatcccat
cagatgagctgtgaggggaatggagagaagatcaagagccctgcaaaaacaacatcaaca
tcctcctcccgtacatcagacacttcacctccaccgaaaaagacaccgccgcctggacct
gataaatcagaatctgctggccattggagccaagggcttaaagtgtcgatgcaggacccc
aagatgcaggtgtacaaagatgatacggtggtggtcatcaaggacaagtacccaaaggcg
cgttaccattggctggttttgccatgggactcgatctccagtctgaaggctctgcggtcg
gagcacgtggacctgctgaagcacatgcagcgtgtgggagatcagatggtgcagcagtgc
cgtgacgcccacaaactgcgcttccgtctgggatatcacgccgtccccagcatgagtcac
gtccacttgcatgtaatcagccaagacttcgactcgccatgtttgaagaacaagaagcac
tggaactccttcaccactgactattttgttgaatctcaagatgtcgttacgatgctggag
cgtgatgggaaagtgactgtgaaggacggcgctagtgaactactgaagctgcctctgcga
tgtcacgcgtgtcataaagagcagccgacgattcccaaactaaaagaacatctcaaaact
cacatgcctgcttaa
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