Ctenopharyngodon idella (grass carp): 127515965
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Entry
127515965 CDS
T08802
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cide03036
]
127515965
Chromosome and associated proteins [BR:
cide03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
127515965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_Hrp3
Motif
Other DBs
NCBI-GeneID:
127515965
NCBI-ProteinID:
XP_051756127
LinkDB
All DBs
Position
7:10731173..10806793
Genome browser
AA seq
2987 aa
AA seq
DB search
MTDPIMDFFDDPNIFGGGLDSLVQDDPGFTPGAVSLDDELHLGPSLENLQVDAGPRSSTI
QHGIPYSQPVGHFDTVKAQTSIEQSFPSPDVGSNDGRSFLSQQQPFQRHTMNQVPQTNGL
FLHNSPMWGNHDQKGNNYHQHHQHHQQLHQQLQHKHFQQQQQFQQHQAQHQQYSHQHLQQ
RQHSLNQHPISNQLQLPHQQIAHQGLHHIAPQHLNFYYEGNVPQNHSQQHHHNSLSVEGS
PFHPTVAQSGHSQSKQYLEASMRPVSSQQSGFQVAQGVQGFTTGPRLEDNDLAFPVQPSP
ATHSFQTDSVSHASSYPTARYAPSVVNETQSYSSAPVSITTSSMAISPSASNLLDTGCPF
LSNSGMEHQQQQVRIPGSPAQQCPLRSSKSDQNPFNSSEVFSDGLNSFSADRPFSTAERR
TCDVPGPLVANQSVSSINGFQALEEVLLGEQHDQRLDDLSEAPDLIGDELLPQLEALDQE
ENSNHSWINVGLGNGREEEVKGQESMEDLPMVYDAQPPKNTNGPSSQPRVLSPPVKSSSS
SSSSSSSYVSVSEKRVQKRHHQHQHQQQQQMESPLSDDKQQKANRIISEAIAKARERGEK
NIPRVMSPESFPSSSSQHRSHRAGSSKSRGKDKSSKKARIVSSSKPKQKAKIGKIVIKFG
KKKRKKTDSSDELSDDDRPTRRSSKDDDSKRRSNRKVKRKKYEDDGEARLSDEEMKVIVK
AKKSNPNAHKQPAVQLFVENPTEEDAAVVDKIMASRVVKNEVSPGVMVEIEEYYVKYKNY
SYLHCEWATEQQLEKDKRIQQKIKRFKIKQAQKAHFFADIEEDPFNPDYVEVDRVLEVSY
CEDKDTGEPVVYYLVKWCSLPYEDSTWELKEDVDQTKIEEFKKLQAAKPHTTRVERPPAS
HWKKREQSREYCNGNCLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLDEIY
RTGIKGPFLIIAPLSTIANWEREFRTWTHLNVIVYHGSVVSRQMLQQYEMYFRDAQGRVI
RGAYRFQAVITTFEMILGGCPELNAIDWRCVIIDEAHRLKNKNCKLLEGFKLMSLEHKVL
LTGTPLQNTVEELFSLLHFLEPTRFPSENTFMQEFGDLKTEEQVQKLQAILKPMMLRRLK
EDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLAKGAGQANVPNLLNTMMELRKC
CNHPYLIKGAEEKILEDFKEVYSPTAVDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLI
FSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGL
GINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLK
LGLDKAVLQSMSGRDNSIGGGGQMQQQLSKKEIEDLLRRGAYGAIMDEEDEGAKFCEEDI
DQILQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWDKWAKKAEIDMDTING
RNSLVIDTPRVRKQTRPFSATKDELAELSEGESSGDDKPKLRRPHDRLNSYGRTECFRVE
KNLLVYGWGRWKDILAHGRFKRQLSERDVECICRALLAYCLVHYRGDDKIKSFMWDLIAP
TEDGRTKELQNHLGLSTPVPRGRKGKKMKTQSSSFDIQKAEWIRKHNPEHMLSDDGYKKH
LKHHCNKVLLRVRMLYYLKQEVIGAQCQKVLDGIDASEIDIWVPEPDHSEMPALWWDMLS
DKCLLLGVYKHGYEKYNTIRADPALCFLERVGRPDEKAIAAEQRGNDFMDGDVDDPEYKP
APALLKDDMEDDASSPGDLVISDAGGEGGSVLDGGGGSLGAGSGVYWPSPSTLTARLRRL
ITASQRFTKSRQILQIHQTQQSMTPALYTLPPTISDTLNPKIAAKIERQQRWTRREEADF
YRVVSTFGVVFDPDLGRFDWTKFRAMARLHKKTDESLHKYLCAFIAMCRRVCRLPAIEGD
MVDSSLAIQPITEERASRTLYRVELLRKIREQVLRHPQLYERLALCQPGPDLPVWWETGS
HDRDLLLGAAKHGVSRTDYHILRDPELCFIAAQRNYSQNKGTVSQSQAQNQTPSLGQCHI
PTPLQHIQAKEASASPLLNQTEMKEELMSEGEEENVERGPKMETLSIRPPTPSGVDEKDD
VNKAGESESRMVAARTKPLTPNSVTRKQKKLSKRSRREARRGSGSESDSDASSSSSSSSS
SSRSSSSSSSSSRSGSSSSSSSSSCSSGSSSSSSSSSSSSEDSDSEEVPKIASAVPGVKG
FDEDSVASLNTTQDDMQDSHVTNGISNPPHPFQGGYMLAASYWPKDRVMINRLDSICQAV
LKGKWPGVRRAYEGNAVTSFYTTKLLDNATTLTEDPSASPQGSKVKKHVADREKEFSVKI
NNEGSLKLTFQKQGLPLKRPLEGEEGPLAQQQYLARLQELQNASDTSLADYTKTLNSYPQ
GNKYCTVNTVHNVQHWMTLQMHAVCGIVVLPEQMRVNGVMDGQPVVKKRRGRRKNVEGMD
LLFMNRNRPPVMPEQAPAGWSGGVASTSAPPGLSTPQGPNTIDTESRVPVISLKDGTRLA
GEDAPKRKDLDQWLKEHPGFVADVGAFIPSATKLQFQDGRPKQKRHRCRNPNKIDINSLT
GEERVQIINRRNARKIGGAFAPPLKDLSRFLQENPEYGVPPEWADVVKQSGYLPESMFDR
ILTGPIVPEEVSRRGRRPKNALAKAATVASASASANAALGLNPLLSNGLLAGLDLPSLQA
LQHNLQSLQSLQLTTGLMGLPHDPTNMAAMFPMMLSGMTGLPNLLGMSGLLGKPSQDAAG
GALTGDEDGKKKNGGESATHKASAQTLITDGKSERTEGQSSKATTSTATNSNQTSASASG
HSLALNPLLLSSMLYPGMLLTPGLNLPVANQPQAANTQPTPPLQPAASEATAQQPGRSED
KDSDEGEEPDEKKDTSGPEGSAKAESSSSESDSSSSSSEDSDSSDED
NT seq
8964 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccccatcatggacttctttgatgaccctaacatatttgggggagggcttgac
agcctagtccaggatgatcccgggtttacccctggggcagtgtccttggatgatgaactt
cacttgggtcctagtttggagaatcttcaggtggatgcagggcccagatcttctaccatc
caacatgggataccctacagtcaacctgtggggcattttgacactgtgaaggcacagacc
tcaatagaacagtcctttcctagtccagacgtaggtagcaatgatggaagatcttttttg
tcacagcagcagccatttcaaaggcatactatgaaccaagtgccccagaccaatggactg
tttcttcacaacagccccatgtggggaaaccatgatcaaaaagggaataactaccatcag
caccatcaacaccaccaacaacttcatcaacaacttcaacataaacactttcaacagcaa
caacagtttcagcagcatcaagctcaacatcagcagtacagtcatcagcatcttcagcag
agacagcacagtctcaatcaacacccgatctcgaaccagctgcagcttccacaccaacaa
atagcccatcagggcttgcaccacattgcaccacaacatctcaatttttactatgagggc
aatgtcccccaaaatcattcccagcagcaccaccataactcgctcagtgtagagggtagt
ccttttcaccctacagttgcccaaagtggtcattcacagtccaaacagtatctcgaggcc
tcaatgaggcctgtgtcttctcaacaaagtggctttcaggtggcacaaggggtccaaggg
tttactacaggtccaaggttggaagacaatgacctggccttccctgtccagccttcccct
gcaacccattcttttcaaactgactcggttagccatgcttcgtcctatcccactgctcgt
tacgctcccagtgtggtaaatgaaacacagtcttactcctctgccccagtatctattaca
acctcttctatggccatctcaccatctgcttcaaacctgttggatactggttgtcctttc
ctgtctaattccggaatggaacatcagcagcaacaagtcagaataccgggaagtccagca
caacagtgccctttacgtagctccaaatcggaccagaatcccttcaactcctctgaggtg
ttctcagatggtctgaactcattctctgcagaccgtccgttctctacggcagagcgaagg
acatgtgatgtgcctggacctttggttgcgaaccagagcgtaagcagcattaatgggttt
caggctctggaggaggtcttgcttggagagcaacatgatcaaagacttgacgacctaagt
gaagctcctgacctaataggagatgagctgttgcctcagctggaggcactagaccaggaa
gagaactctaatcactcttggataaatgtaggactggggaatggccgagaagaggaagtg
aaggggcaggaaagcatggaggatctgccaatggtatatgatgcacagcctcctaagaac
actaatggtcctagcagccagccgcgggtactcagcccaccagtgaaaagcagctcctct
tcttcctcttcgtcatcctcgtacgtatccgtgtcagagaagagggtgcagaagcgacat
catcagcatcagcatcagcagcagcagcagatggagtcacccctttcggacgataaacaa
cagaaggccaatcgaatcatctcggaggccatcgccaaagcacgagagaggggagagaaa
aatattccgcgcgtcatgagtcctgaaagcttcccgtcttcgtcgtcacagcaccgcagt
cacagggcaggttcctccaagtccagaggcaaggataagagttccaagaaggcccggatt
gtgtcgtcatccaagcccaagcaaaaggctaaaattgggaaaatcgttataaagttcgga
aagaagaagagaaagaagacagattcctcagatgagctgtctgatgatgacagaccaact
cgacgatcctctaaagatgacgattcgaagcggcgttcaaaccggaaggtcaagaggaag
aagtatgaggatgatggtgaggctcgactgtctgatgaagaaatgaaggtcatcgtcaaa
gccaagaagagcaatcccaacgctcacaaacaacctgcagtgcagctgtttgtggagaac
ccaactgaggaagatgctgctgtggttgataaaatcatggcatctcgtgtagtgaaaaat
gaggtttctcctggagtgatggtagaaattgaagagtattatgtcaaatacaaaaactat
tcatatcttcactgtgagtgggcgacggagcagcagttagagaaagacaagaggatccag
cagaaaatcaagcgcttcaagatcaaacaagcgcagaaagcacacttctttgctgatatt
gaggaggacccatttaatcctgactatgtagaagtggaccgagttcttgaagtctcatac
tgtgaggacaaggacaccggagagccggtggtgtattatctggtgaaatggtgctcattg
ccatatgaggacagcacatgggagctgaaggaagatgtagaccagactaagattgaagag
ttcaaaaagctgcaggcagcaaaaccacacaccaccagagtggagcgtcctccagcaagt
cactggaagaagcgggagcaatcacgagagtattgtaatggaaactgtctcagggattac
cagctggagggggtcaactggcttcttttcaactggtacaacaggcgtaactgtattttg
gcggatgagatgggtctgggaaagaccatccagtctattacgtttttggatgagatctat
cgcacagggataaaagggccgttcctcatcatcgcccctctctctaccatcgccaactgg
gagagagagttcagaacctggacgcacctcaatgtcattgtgtaccatggcagtgtggtc
agcagacagatgcttcagcagtatgagatgtacttcagagacgcgcagggtcgtgtgata
agaggtgcttaccggtttcaggcagtcattacaacatttgagatgattttgggaggctgt
ccagaacttaatgcaatagactggcgctgtgtcatcattgatgaagcccatcgactcaaa
aataagaactgcaagctactggagggcttcaaacttatgagtctggaacataaggtgttg
ttgacgggcactcccctacaaaacacggtagaggaactctttagtctgctgcacttcctg
gagccaacccgcttcccttctgaaaacaccttcatgcaggaatttggagacctcaagact
gaggagcaggtccagaaactccaggccatcctgaagccgatgatgctgcgtcgtcttaag
gaagacgtggagaagaagttggcccctaaagaggagaccatcattgaagtggagcttacc
aacattcagaagaaatactaccgcgccatactagagaagaacttctcattccttgctaaa
ggagctggccaagccaatgttccaaacctgctcaacaccatgatggaactgcggaaatgc
tgcaaccatccctacctcatcaaaggggctgaggagaagatcttggaggatttcaaggag
gtgtacagccccacagcagtagatttccacctgcaggctatgattcagtcggcaggtaaa
ctcgttctcattgacaagctgctccccaagatgaaggctggtggacacaaagtgctcatc
ttctctcagatggtgcgctgcctggacatcctggaagactacctcatccagagaagatac
ctctatgagcggatagacggtcgtgtacgtgggaacctccgtcaagcagcaatagaccgt
ttcagtaaaccggactccgatcgattcgtcttcctgctgtgtacacgagcaggtggtctc
ggtattaacctcacagctgccgacacctgtatcatctttgactctgactggaacccacag
aacgacctgcaggctcaggctcgctgccacaggattggtcagaataaagctgttaaagta
tatcgactaatcacacgtaactcgtatgagcgagagatgttcgatagagccagtctgaag
ctgggattggataaagcagtgcttcagagcatgagtggacgggacaacagtataggagga
ggagggcagatgcaacagcagctctctaagaaggaaattgaggaccttctgcggcgtgga
gcttatggtgccataatggatgaggaagatgagggggctaaattttgtgaagaggacatt
gaccaaatcttgcaacgcagaaccaagaccatcactattgaatcggagggtcggggctcc
acctttgccaaggccagttttgtagcttcagggaacagaacagacatctctctggatgac
cccaacttctgggacaagtgggccaagaaagcagagattgacatggatacaatcaatggc
agaaacagtctggtgatcgacacccctcgggtcaggaaacagacccggccgttcagcgcc
actaaggacgagctggctgagctctctgaaggggagagcagtggagacgacaaacccaaa
ctccggcgaccacatgaccgtctcaacagctatggccgcacagagtgcttcagggtggag
aaaaatctgttggtgtatgggtggggccgctggaaggacatcctggctcatggccgcttt
aagcgacagctgagtgagcgtgacgtagagtgtatatgcagggcgctcctggcatactgc
cttgtgcattaccgtggagacgacaaaatcaagagcttcatgtgggatctaatcgctccc
acggaggacggcaggaccaaggaacttcagaaccatttgggtttatcgactccagtaccg
cgaggcagaaagggaaagaagatgaagactcagtcaagctcatttgacatccagaaggca
gagtggatccgaaaacacaacccagaacacatgttgtctgatgatgggtacaagaaacac
ttgaaacaccactgcaacaaggtgctgttgagggtcagaatgctgtactatctgaaacaa
gaggtgattggagcacagtgccaaaaagtgttggatgggatagatgccagtgagatagat
atctgggttcctgagccagatcattcagagatgcctgctctgtggtgggacatgctctcg
gacaaatgtctgctgttaggagtgtataagcatggttatgagaagtacaacactattcgt
gcagatccagcactgtgtttcttagaaagggttgggaggccagacgagaaggccatcgct
gctgaacagagaggaaatgactttatggatggggatgtggacgaccctgagtataagcct
gctccagctttgctgaaggacgatatggaggacgatgcttcctccccgggagacctggtc
atcagtgatgcaggtggagaaggagggtctgtattagatggtggaggtgggtctctgggt
gctggctcaggggtgtactggccctcgccctccacgctgacggcccggctgcggcgtctg
atcactgcatctcagcgattcaccaagagcagacagatacttcagatccaccagacacag
cagtccatgacccctgccctctacaccctgcctcccacgatcagcgacacgctcaatccc
aaaattgctgctaagattgaaagacaacaacggtggacgcggagggaggaggcagatttc
taccgtgtggtttcgacatttggggtagtgtttgatccggatttgggccgttttgactgg
accaagttcagagccatggctcgactgcacaagaagactgacgagagtctacacaagtac
ctgtgtgcctttattgccatgtgcaggagggtctgccgcctacccgccatagagggagat
atggtggactcctctcttgctattcaaccgatcacagaggagcgtgcgtcccgtacctta
taccgcgtggagttgctgcggaagataagagaacaggtgttgcgtcaccctcagctttat
gagcgtctagcactgtgccagccaggaccggatcttccagtgtggtgggaaacaggatcc
cacgatagagatcttcttcttggggcagccaagcacggagtcagccgaacagactaccac
atcctccgtgacccggagctctgcttcattgcggcccagaggaactacagccagaacaag
ggaactgtatcacaatcccaagcccagaatcagacgccttcgctgggacagtgtcacatc
ccgacccccctccagcacattcaggctaaagaggcttctgcttcaccactcctaaaccaa
actgaaatgaaggaggagctgatgtcagagggagaagaagagaatgtagagcgagggccc
aagatggagacgctctctatcagaccacccacaccttcaggagtggacgagaaagatgat
gtcaacaaagcaggagagagtgagagtcggatggtggcggccagaacaaaaccactcacg
ccgaactcagtaactcgaaaacaaaagaagctgagtaagcggagccgcagggaggccagg
agggggtcgggatcagaatcggactcggacgcctcctcgtccagctcttcgtcaagttct
tcatcaagatcttcttcctcatcctcgtcttcatcacggtcgggatctagttcctcatcc
tcgtcttcctcctgttcttcgggctcctcatcttcatcatcatcatcatcctcatcttca
gaagacagtgacagcgaagaggtaccaaagatcgcgtcagcagtacctggtgttaaaggc
tttgacgaagacagcgttgcctcactcaacactacacaagatgacatgcaggacagtcat
gtgaccaatggtatctctaaccctccccaccctttccagggaggctatatgcttgctgcc
tcctactggccaaaggaccgtgtcatgataaaccggttggacagtatatgtcaggcagtg
ttgaagggcaaatggccaggggttcgtcgtgcatatgaaggcaatgcagtgacttctttc
tacaccactaaactcctggacaacgcaactacgctaacagaagacccctcagcttcccct
cagggttcaaaggtgaagaagcatgttgcagacagagaaaaggagttctcagtcaaaatc
aataacgagggcagccttaaactgaccttccagaagcaaggcctgcctctgaagcgcccc
ctggagggtgaggaaggacctctcgcccaacagcagtacttagcccggctacaagagtta
cagaatgcatctgataccagcctagcggactacaccaaaacactgaacagctatccacaa
ggtaacaaatactgtactgtaaacactgtacacaatgtacaacactggatgacactacaa
atgcatgctgtttgtggtattgtagtactgccagagcaaatgcgagtgaatggtgtgatg
gatggacagcccgtagtgaagaagaggagaggacggcggaagaatgtggaggggatggac
ttgctgttcatgaacagaaacaggcctcctgtgatgccagagcaggctcctgctggctgg
agtggtggcgtcgcaagtacatccgctccccctggtctgagcacacctcaagggcccaat
accatcgatacggagagccgcgttcccgtcatcagcctcaaagatgggacgcgactagct
ggagaggacgctccaaaacggaaagatcttgaccagtggctgaaggagcacccgggcttc
gtggcagatgtgggagcctttatccctagtgcaaccaagctgcagtttcaagacggcaga
ccaaaacagaaaagacatcgctgcagaaaccccaacaaaattgacatcaacagcctgact
ggagaagagcgagtacagattatcaacaggcgaaatgctcgcaaaattggtggtgcgttt
gcacctcctctgaaagatttaagccggtttctgcaagagaatccagagtatggcgtccca
ccagagtgggctgacgttgttaaacagtctggttaccttcctgaaagtatgttcgaccgc
atccttactggccccatcgttcccgaagaggtgagccgacgaggtcgacgccccaaaaac
gctctggctaaagcagccaccgtggccagtgccagtgccagtgccaacgctgccctgggg
ctcaacccactcctatccaacggcctcctcgctgggctggacctgcctagtcttcaagct
cttcagcacaacctccagagtctccagtctctccaactcaccactggcctaatgggactg
cctcatgaccccaccaacatggccgccatgtttccaatgatgctgtccggaatgactggc
ctgccgaacctccttgggatgagcggtctcctcggaaagccctcgcaggatgcggcgggt
ggagctttgacaggcgacgaggacggaaaaaagaagaacggcggagagtccgccacgcac
aaagcgtcggctcagactttgattacagatggcaaatcagaaaggacagagggtcaaagc
tccaaagccaccacctcgacggccaccaactcaaatcaaacaagtgcttctgcttcaggc
cactcactggccctcaacccccttctcctctctagtatgctctacccagggatgcttctt
actccaggccttaacctgcctgtggccaaccagccgcaagctgcaaacactcagccaacc
ccaccgctgcaacctgctgcctctgaagccacggcccagcagcccggccgctcagaggac
aaagacagcgatgagggggaggagcccgacgaaaagaaggataccagtggtccagaaggc
tcggcgaaggcggagtcgtcctcctccgagtccgacagctcctcctcgtcatccgaggat
tccgattccagcgacgaagactga
DBGET
integrated database retrieval system
