Ctenopharyngodon idella (grass carp): 127515985
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Entry
127515985 CDS
T08802
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127515985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127515985
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
127515985
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Fip1
DUF3439
Motif
Other DBs
NCBI-GeneID:
127515985
NCBI-ProteinID:
XP_051756170
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Position
1:15331435..15343649
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AA seq
565 aa
AA seq
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MSAEEADKTTTTDASPGDEEEEWLYGDEGESKETEEEEAKLTAAISVTSAPPVTEEVTAT
TTTTTTTTTTTGNGVASQVTNKNTEEAPGEDEDSESDSDDDDDDVRVTIGDIKTGAPQYT
AYGGTPVNLNIKSAGSRAYGAGSKVKGVDLEAPGNINGVPVLEVDMESFEEKPWRKPGAD
LSDYFNYGFNEDTWKAYCEKQKRLRMGLDILNIGSTTSKISVQQGRTGNNEKEITIPAHA
SKADFSTPSNLYKTGINPARISPPQWAGPATQEMPYYTKTPGTIDVIGGQTATISRVEGR
RRHNLEGNNIQVISEHPSSEAEPAVAKMPPPFFPPGPLPPNIPPPPFLPPPVSQAPPLIP
PPRMPITVPPPNFPPPTGGPPPSLIPTMDNSGHPGGYDGRPVAPYPFPTGGFPPPMQGAV
SPWPGLMDNSKQWDYYPRREKEREKERERDRQRERGHERDHSPSSVAYNSDEERYRSYRD
YGDRGYERHRERASREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDSHRRHKHKK
SKRSKEGKEPSEEHSVDQENQEAME
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagaggaggcggataaaaccaccaccactgatgcgagtccaggagacgaggag
gaggaatggctgtacggggatgaaggtgaaagtaaagaaactgaagaagaagaggccaaa
ctgacagcagccatcagtgtgacctctgctcctcctgttactgaggaggtcaccgcgacc
accaccaccaccaccactaccaccaccactactggaaatggtgtggccagtcaggtaaca
aacaagaatactgaagaagcacctggagaagatgaagacagtgagagcgatagtgatgat
gacgatgatgatgtccgtgtcaccattggagatatcaaaacaggagcaccacagtatacg
gcatatgggggaactccagtgaacctgaacataaagtcagctggcagcagagcgtatgga
gcaggttctaaagtgaagggcgtagacctcgaagctccaggcaacatcaatggagttcca
gtcctggaagtggacatggagtcctttgaggagaaaccatggaggaagccaggtgcggac
ttgtctgactattttaactatggttttaatgaggacacgtggaaagcatactgtgaaaag
cagaagaggttacgcatgggcctcgacattctcaacattggatccaccaccagcaagatc
tcagttcagcagggtcgtacaggtaacaatgagaaggagatcacaataccagctcatgca
tctaaagcagacttttccactccatccaacctgtataaaacaggaatcaacccagcaagg
atatcccctccacagtgggcagggcctgccactcaagaaatgccctattatacgaagacg
cccgggaccattgatgtgattggaggacagactgccactattagcagggtggaaggaaga
cgtcgtcacaatctggaggggaataacatccaggtgatctcggaacatcccagctctgag
gctgaacccgctgtggctaagatgccaccacctttctttcctccagggccactgccaccc
aacatcccccctcctccattcctccctcctcctgtcagtcaggctccacctctaatcccg
cctccacggatgcctatcactgttcctcctcccaatttccctcctcccacaggaggacct
cctccttcactgatacctactatggacaacagtgggcacccaggaggatatgatgggcgt
cctgttgctccatacccttttcctacaggtgggtttcctccacccatgcaaggagctgtt
agcccctggcccggtttgatggacaactcaaagcagtgggactactaccctcggcgagaa
aaagagagggaaaaagaaagagaaagggacaggcagagggaacggggccacgagagagac
cacagtccctcctctgtggcttataacagtgatgaagaacggtatcgttcttaccgtgac
tatggagacagagggtacgagaggcatcgggagcgagcgagccgtgagaaggaggagcgg
cacagagagaggagacacagagagaaagaggaggggaggcacaagtcatcacggagcagt
agcagacggagacatgacagcgaggagggtgacagtcaccggcgccacaagcacaagaag
tccaagaggagcaaagagggcaaggagcccagcgaggagcattctgttgaccaggagaac
caggaggccatggagtaa
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