Ctenopharyngodon idella (grass carp): 127516025
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Entry
127516025 CDS
T08802
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127516025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cide03021
]
127516025
03036 Chromosome and associated proteins [BR:
cide03036
]
127516025
Transcription machinery [BR:
cide03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
127516025
Chromosome and associated proteins [BR:
cide03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
127516025
RSF complex
127516025
WICH complex
127516025
B-WICH complex
127516025
NORC complex
127516025
BRF complex
127516025
NuRF complex (fruit fly)
127516025
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
127516025
NCBI-ProteinID:
XP_051756246
LinkDB
All DBs
Position
1:40879829..40893000
Genome browser
AA seq
1034 aa
AA seq
DB search
MSQTESSMEQQQREEPSQLDSVGPAEDDASENGRDEASDTAMDSEAHSSSPSSKEKDQPG
GYEEKVKTDRTNRFEYLLKQTEVFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSV
GDNRHRRTEQEEDEELLNESSKATSVCTRFDDSPSYVKTGKLRDYQVRGLNWLISLYENG
INGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFKRWVPSLRAV
CLIGDRDERTAFIRDTLLPGEWDVCVTSYEMVIIERAVFKKFNWRYLVIDEAHRIKNEKS
KLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLGDT
KLVERLHTVLRPFLLRRIKADVEKSLLPKKEIKMYIGLSKMQREWYTKILMKDIDILNSA
GKMDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNSGKMVVLDKLLPKLKEQ
GSRVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQVSINAFNEPNSSKFVFMLS
TRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFITENTVEERIV
ERAEMKLRLDSIVIQQGRLVDPNMSKLGKDEMLSIIRHGATHVFASKESEITDEDIDAIL
ERGEKKTMEMKEKLANLGESSLRNFTMDTENSVYNFEGEDYREKKKVITNWIEPPKRERK
ANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYK
VPRNPDLPNSAQMQKEEQAKIDEAEPLNEEELEEKENLLSQGFTIWTKRDFNQFIKANEK
WGRDDIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKK
ALDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCIRN
SPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPRTSSAQKRKQD
GTPDGRGRRKKLKL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaaacagaaagcagcatggagcagcagcagcgggaagagccgagccaactcgac
tcggtcggtccggcagaggatgatgcttcagaaaatggtcgtgatgaagcatcggataca
gcaatggatagtgaagcgcactcgtcatctccctcatcaaaagaaaaggaccagccgggt
ggatatgaagaaaaagtgaaaacagaccggaccaacagattcgagtacctcctgaagcaa
accgaagtatttgctcatttcatccaaccagctgcccagaagactccaacttcacctctg
aagatgaagcctggtcgccctcgcatcaaaaaagacgagaagcagaacctgctctctgtt
ggagataaccgccaccgtcggactgagcaggaggaggacgaggagctgctaaacgagagc
agcaaagccaccagtgtttgcacacgttttgatgattctccttcttatgtgaaaaccggc
aaactgagagactaccaagtccgtggactgaactggctcatttccctctatgagaacgga
atcaatgggatccttgctgacgaaatgggtcttggtaagactcttcagaccatctctctg
cttggctacatgaagcactatagaaacattcctggacctcacatggttctggtgcccaaa
tccaccctgtataactggatgaatgagttcaagcgctgggttccctctctacgagcggtc
tgcctcatcggggacagggatgaaagaacggcttttatccgtgacacgctgctgccaggt
gaatgggacgtgtgcgttacctcctatgagatggtcattattgagagggctgtcttcaaa
aagttcaactggagatacctggtcattgatgaggctcaccgtatcaagaacgagaaatcg
aagctttcagagattgtgcgagagttcaagaccacaaatcgattactgctgactggaacc
ccactgcagaacaaccttcacgagctgtgggcgctgctgaacttcctgctgccagatgtt
ttcaactcctcagaggattttgattcctggtttgacaccaataactgtctgggagacaca
aaattggtggaacgtctacatactgtacttcgtccattcctgctgaggcgtatcaaagcc
gatgtggagaagtctctcctccccaaaaaggaaatcaagatgtatattgggcttagcaag
atgcagagagaatggtacaccaagatcttgatgaaggatattgacattctgaactctgct
ggtaagatggacaaaatgcgtctgttgaacgtgctgatgcagctcaggaaatgctgcaac
cacccctacttgtttgatggagcggagcctggccctccctacaccactgacctccacctg
gtggtcaacagcggaaagatggtggtgctggacaagctgctgcccaagctgaaagagcaa
ggttcccgtgtgctgatcttcagtcagatgaccagggtgctggacattctggaggattat
tgtatgtggcgcaactacggttactgtcgtctggatggacagactcctcatgaggagcga
caggtctccatcaatgccttcaatgagcccaacagctcaaagtttgtgttcatgttgagc
accagagcaggaggtctcggtatcaatctggccaccgctgatgtcgtcatcatctacgac
tctgactggaatcctcaagtggatcttcaggctatggatcgtgcccacaggattggtcaa
aagaaacaagtgcgcgtgttccgattcatcacagaaaatacagtcgaggaaagaattgtg
gagcgtgcagaaatgaagctccgcttggactccattgtcattcaacaagggaggctggtc
gatccaaacatgagcaaactgggtaaagatgagatgctgtccattattcgacatggtgcc
actcatgtgttcgcctctaaggagagtgagatcaccgatgaagacattgatgccatattg
gagagaggagagaagaagaccatggagatgaaggaaaagctggccaatcttggagaaagc
tcgctgaggaacttcaccatggacacagagaacagcgtgtacaactttgagggtgaagat
tacagagaaaagaagaaggtcatcactaactggattgagccacccaaaagagagcgcaaa
gcgaactatgctgtggatgcttacttcagagaggccctgcgtgttagtgagcccaaagca
ccaaaggctccccgtcctcctaaacagcccaatgttcaagacttccagttctttccccct
cggctgtttgagctgctggagaaggagatcctgtattacaggaagactattggctacaag
gtgccaagaaaccctgatctgcccaactcggcccaaatgcagaaagaggaacaggccaag
atcgatgaagctgaaccacttaatgaggaagagctggaggagaaggagaacctcctctca
cagggttttactatctggaccaagcgtgacttcaaccagttcatcaaggccaatgagaag
tggggaagagatgacattgagaacatcgcccgggaggtcgagggcaaaaccccagaggag
gtcatggaatattcggctgtgttctgggagcgctgcaatgagcttcaggacattgaaaag
atcatggctcagatcgagagaggagaggccagaatccagaggagaatcagcatcaagaaa
gcactggactctaaaattggccgttataaggcgccattccatcagctcaggatctcgtat
ggcacaaacaaagggaaaaactacacagaggaggaggatcgatttctcatctgcatgctg
cacaaactgggattcgacaaggagagtgtttatgatgagctccgccagtgcatacgcaac
tcaccccagttccggttcgattggttcctcaagtcccgcacagccatggagctccagagg
agatgtaacacgctcatcacgctcattgaacgtgagaacatggagttggaggagcgagag
aaagcagagaagaagaagaggggccctcgcacgtcttcggcccagaaacgcaagcaggac
gggacccctgatggacgtggccgcaggaaaaagctcaaattgtga
DBGET
integrated database retrieval system
