KEGG   Ctenopharyngodon idella (grass carp): 127516030
Entry
127516030         CDS       T08802                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1 isoform X1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
cide  Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:cide00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cide03041]
    127516030
Spliceosome [BR:cide03041]
 Complex B
  Other components
   Complex B specific factors
    127516030
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_CDC20-Fz WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 LisH_TPL Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_EML WDR90_beta-prop_4th Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_TEP1_C Beta-prop_Nup120_160 Beta-prop_Vps41 Ge1_WD40 Beta-prop_DCAF4 Beta-prop_NWD2_C Beta-prop_HPS5 Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_NUP159_NUP214 Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_IP5PC_F Beta-prop_VPS8 Beta-prop_WDR75_2nd PROPPIN Beta-prop_DCAF12 VPS8_N LisH LisH_PAC1 LisH_WDR26 DUF7165 Beta-prop_IFT122_2nd
Other DBs
NCBI-GeneID: 127516030
NCBI-ProteinID: XP_051756261
LinkDB
Position
1:complement(35750904..35766854)
AA seq 552 aa
MDLEVESADVIRLIMQYLKENNLHRTLATLQEETTVSLHTVDSIDSFISDINNGHWDIVL
LAIQYLKLPDKLLIDLYEQIVLELIELGELGAARCLLKQTDPMIMLSHTQPERYSHMENL
LTQPYFDSQVAYPVGSSKEKRRLAIAQAFAGEVCLVPPSRLMALLGQGRICEGALYRLQE
TKALRQFGSLAMLSLKWQQHQGLLPPGMSLELFRGKGALKDMEEERFPTQLSRLIKFGPK
SHVECARFSPDGQYLITGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDEAVLCLAVSH
DSDMIASGAQDGKIQVWRILNGTCLNRLERAHSKAVTCVCFNKDSSQLLSASFDQIIRLH
GLKSGKTLKEFKGHTSHVNEVIFSHDGHHVISASADGTVKVWNMKTMDCTHTIKTPDIPE
GTDITVNNVVLVPKTPEHFVVCNRTNTVVVTNIHGQVMRSFCSGVRRGGDFVCCTLSPRG
EWIYCVGEDYVLYCFSTITGKLERTLTVHEKDVIGITHHPHQNLIATYSEDGLLKLWKPK
KVDLQELKVGHN
NT seq 1659 nt   +upstreamnt  +downstreamnt
atggaccttgaagtggaatccgcagacgtgattcgcttgatcatgcaatatctgaaggaa
aataatttgcaccgcactctggcgacgcttcaagaggagacgaccgtctcgctccacacg
gtcgacagcatcgacagcttcatctccgatatcaacaacggccactgggatatagtgttg
ctcgcaatccagtatctgaaacttcctgacaagctgctcattgacttgtacgaacagatt
gtgctggagttgattgagttgggggagctgggagcagcccggtgtttactgaagcagact
gatcccatgatcatgcttagccacactcaacctgagcgctactcgcacatggagaacctt
ctcacccagccatactttgactcacaagtggcatatccagtgggcagcagtaaagagaag
cgcagactggctattgctcaagcttttgcaggagaggtctgtttggtgccaccttctcgt
ctcatggctcttctgggccagggccgtatatgtgaaggggctctgtacaggttacaggag
accaaagcactaaggcagtttggctcattagcaatgctgtctctgaagtggcagcagcac
caaggtctcttacctccaggtatgtcattggaactgttccggggcaaaggtgcattgaag
gacatggaggaggagcgctttcctactcagctcagtcgcctcataaagtttgggccaaaa
tcccatgtagagtgtgctcgattctctcctgatggacagtatttgattactggatctgtt
gatggtttcattgaagtctggaacttcaccactggtaaaattcggaaggatctgaagtac
caagctcaagacaatttcatgatgatggatgaggctgtgctgtgcttggcagtaagtcat
gactccgacatgatcgcctctggagctcaggatggaaagatacaggtttggagaattctg
aatggaacatgcctgaatagattagaacgagcccacagcaaagcagtcacctgtgtctgc
ttcaacaaggacagcagtcaactattaagtgcctcctttgaccagattatcaggcttcat
ggtttgaaatcaggaaagacgctgaaggagtttaaaggccatacgtctcatgtaaatgag
gtcatcttctcacatgatggccatcatgtcattagcgcgtcggcagatggcacggtaaag
gtctggaacatgaagacaatggattgcacccacacaataaaaacccctgacattcctgag
ggtacagacatcactgttaacaatgttgtgcttgtcccaaagactcctgagcactttgtg
gtgtgtaataggaccaacacagtggttgttacgaatattcatggccaggtgatgaggagt
ttctgttcaggcgtaagaaggggaggagactttgtttgctgcacgttgtctccacgtgga
gagtggatttattgcgtgggagaggactatgtgctgtactgcttcagcaccatcactggc
aaactagagagaaccctcacggtacatgaaaaagacgtgattggcataactcaccacccc
catcagaatctcatcgccacatacagcgaagatggcctactcaaactctggaagccgaag
aaggtggatcttcaggagctcaaagttggtcataattaa

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