Ctenopharyngodon idella (grass carp): 127516232
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Entry
127516232 CDS
T08802
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127516232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cide03041
]
127516232
03009 Ribosome biogenesis [BR:
cide03009
]
127516232
Enzymes [BR:
cide01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127516232
Spliceosome [BR:
cide03041
]
Complex A
U2 snRNP components
U2 related factors
127516232
Complex B
127516232
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
127516232
Ribosome biogenesis [BR:
cide03009
]
Eukaryotic type
90S particles
Helicases
127516232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
AAA_25
SRP54
Atrophin-1
Flavi_DEAD
AAA_29
Motif
Other DBs
NCBI-GeneID:
127516232
NCBI-ProteinID:
XP_051756609
LinkDB
All DBs
Position
7:41114090..41148023
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AA seq
763 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSSDGKDRDRDREDRSKDRDRDRDRDRDRDRDRERDSKGSSV
PLSSSLPAGGMLPLKQTAMNQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILNR
HQSFVLVGETGSGKTTQIPQWCVDMVRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVM
LGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDIL
MGVLKEVVRQRSDLKVIVMSATLDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEPERDYL
EAAIRTVIQIHMCEEDEGDVLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKIIPLYSTL
PPQQQQRIFEPPPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIR
VESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVL
QLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLA
KMVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYH
AFKQNHESVQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRA
LVTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTD
IKPEWLVKIAPQYYEMGNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacggcatcggttggatttaggcgatgattattcgtcgagcaagaagagatct
tctgacggtaaggaccgggacagagatcgggaagaccggtcgaaggatcgcgatcgtgac
cgcgacagagaccgagaccgtgatcgagaccgagagagagacagcaagggatctagcgtg
cccctcagctccagcttgccagccggtgggatgcttcctctgaagcagacagccatgaat
cagcagatcaaccccttcactaacctgcctcacacaccgcgttactacgagatcctcaag
aagaggctgcagttgcccgtttgggagtacaaagaacgttttaatgacatcctcaaccgt
catcagagctttgtgctcgttggagagacaggctctggaaaaacaacacagatccctcag
tggtgtgtggacatggtgaggtccctccctggcccgaagcgtggcgtggcttgtacgcag
ccacgtagggtggcagccatgagtgtggctcagagagtggcggatgaaatggacgtcatg
ctggggcaggaggttgggtactcaatcagatttgaggactgtagctctgcaaagaccata
ctaaaatatatgacagatggtatgttactccgtgaggctatgaacgaccccttactggag
cgatacggtgtcattattctcgatgaggctcacgagcgcacattagccacagatattctg
atgggtgtcctcaaagaagtggtccgtcagaggtccgaccttaaggtcatcgtaatgagt
gccactctggacgctggaaagttccagatttatttcgacaactgccccttgctcaccatt
cccggccggacgcatcccgtggagatcttctacacgcccgagccggagagagactacttg
gaagcggccattcgcacagtcatccagatccatatgtgtgaggaagatgagggcgatgta
ctgctcttcctcactggacaggaggaaatcgacgaagcctgtaaacggatcaaacgtgag
attgatgatctcggccctgaggttggtgacatcaaaattatcccgctctactccacgctg
ccaccacagcaacagcagaggatctttgagccacctccaccccgcaaacccagcggcgcc
atcggcaggaaggttgtggtttctacaaacatcgctgagacgtccctgaccatcgatggc
gtggtgtttgtaattgatcctggctttgccaagcaaaaggtgtataaccctcgtattcga
gtcgagtcgctgctcgtaacggctattagtaaggcttcagcccagcagagagccggccgt
gctggacgtacgcgcccgggaaagtgcttccggctctacaccgagaaggcctacaagact
gagatgcaggataacacataccctgagattctcaggtcgaatttgggctctgttgtgcta
cagctcaaaaagcttggtatcgatgacctagtgcactttgacttcatggacccaccagct
cctgagacactgatgcgagccctggagctgttgaactatctcgcggcactgaatgacgac
ggtgacctgacggagctgggctccatgatggctgagttccctctcgacccccagctggcc
aagatggtcatcgccagctgcgagttcaactgctccaatgagatcctctccatcaccgca
atgttatcagtcccacagtgctttgtgcgtcccaccgaagccaagaaggcagctgacgag
tccaaaatgaggtttgcccacatcgacggggaccacctgaccttgctcaacgtctaccat
gcctttaaacagaaccacgagtcagtgcagtggtgctatgataactttgttaactaccgc
tcgctgatgtcggctgataatgtgcggcagcagctctcacgcatcatggaccgcttcaac
ctgccacgacgcagcacagagttcaccagccgtgactactacatcaacatccgccgcgct
ctagtcaccggattcttcatgcaggttgctcacctggagcgcactggccactatctcaca
gtgaaggacaaccaggtggtccagttgcacccttctaccgtactggaccacaagcctgag
tgggttctctacaatgagtttgtgctgaccaccaagaactacatccgcacctgcactgat
ataaaacccgaatggctggtgaaaatcgctccacagtactacgaaatgggcaacttccct
cagtgcgaggctaagaggcaactggagcgcattgttgctaaacttcaaaccaaggagtac
tctcaatactga
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integrated database retrieval system
