Ctenopharyngodon idella (grass carp): 127516386
Help
Entry
127516386 CDS
T08802
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cide04131
]
127516386
Membrane trafficking [BR:
cide04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
127516386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_1
TPR_2
TPR_8
TPR_7
TPR_NPHP3
TPR_10
SH3_1
ARM_TT21_4th
SNAP
SH3_9
Motif
Other DBs
NCBI-GeneID:
127516386
NCBI-ProteinID:
XP_051756923
LinkDB
All DBs
Position
7:21669599..21693062
Genome browser
AA seq
1320 aa
AA seq
DB search
MSAATRRNSSKTGNDLESDPDRIRTIRRELSNEYTHNERDNILESSFKDFKTSRGSVKGT
SGASDDNIPTVLAMQLALVEGPDRLPADEGTQEVLCRKLCVLEADLSGVKTLISELSAHF
VSINSGERTIFITFKTLEEIWKFSTYHRMGFLGQCMENLLMDQEFWLISLDQQSGIEISV
KEETLNLMYKGFLMQEGSFFGCCTANQMFDSSTSGSDLYLEKGDIALFEPPFLGSGWTVL
SLADGSRGTKQKPALEPVIPFHEWFLKSCPETVLVGGGKDTSDLPLQIAVGVCETTEEHD
ADGPDELSFQAGERIIILGLLVACFEWFMGKSEKTGDIGLVKTNLVKATSSFCESSDIFL
KDEDRQIITLDQDKIKEETISLLKKICQCDVGTNYKLDLAKEIPGSVQNKTQEVNNLKQK
VNCILSKVDENQRNKDSSVSIKHQMEKEVNDTEESWEPPRFSVCSEQDSTSPDGHHALLS
FLSSRDHQPEFMLLYSAYPEFLISHFEGHSDEEDIVVYLGIARELARKKRVSWAQSRICF
LLGQLCAGRSKFSQARVYYEEALNVPRDCFTDMFLLSAIYSNLALIYLTQKNHEKFFTMS
ERLSALLMAVPDCLFGCEDPEVLKYVLKKAILAKNQPAEARACFILAKLHLKLKDGMSAI
PFIERLLTLADEVPEACDETLSHAFLVLARLYSDQSLPSLAESCTRRASLQVGATASHCL
CGVSLLMENALELYGVVVPTQVAPYLTRAAALVSPGEEPALGHVHALCLSWLFHRHSMPD
RAVRYMLTVLDHSNMSSVGQSDTTAALIWMAWLYICNQQPGTALEVLDAVLSSLPEHCTT
QLEGVVYNMRAISYRHSADIRQAAESYRAAIEICEEFEDRHNWAIALANCGFMCLQIKAK
RLAEEYLTQSVELFSELEDEGHELSFISVLLELGRHFISQGKHENGKIYYEWALLTAMYI
GHMDSQLQATRHLCQLYEEVCPDEAQCIIYNEHQLNLLQRIGDKSLEGEILEKISQLYLN
LATEKANRAALDYTKQSLGIFIDLGRKRKEAHAWLQAGKIYHILQQTELVDLYVQVAQDM
ALSTGDTLFTLEMLETAGDVFFNSSQDREKAICFYRDRALPIAVKTSSVRSQLRLCNKLS
ELLLQLGQCSEAIEYTQTALDISVSLADHLNERVAFHRLATLYHCLGQFEMAEHHFLKAL
SLCPSPLQYDEEALYYVRVYQTLGDIIFYDVKDPFDAAGYYHLALAAAMDLGNKRSQLEL
CTRLATIYHNFLMDRELSLFFYQRARAFANDLHIRRINLAPDYSFRTTNKYKNTITGATR
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccgctactcgtagaaactcgtccaaaaccgggaacgacttggagtccgatccg
gacagaattcggacgatacgtagagagctgtcgaatgagtacacacacaatgaacgggat
aatattttggagtcttcatttaaagattttaagacctcaagaggaagtgtcaaaggtaca
tcaggagcttctgatgataacataccaacagtgttggctatgcagctggctttggtggag
gggccagatcgacttcctgctgacgagggcacacaggaagtgctctgcaggaaactttgt
gtgctggaagctgacctctcaggggtcaagaccttaatctctgaactgtctgctcatttt
gtatccatcaacagtggggaaaggactatatttatcacttttaaaacccttgaagaaata
tggaagttcagcacataccacagaatgggcttcttgggtcagtgtatggaaaatcttctc
atggaccaggagttctggttaatctcccttgatcagcaatcaggaattgagatctcagtt
aaagaggagacactaaatctgatgtataaaggctttcttatgcaagaaggttccttcttt
ggatgctgcacagcaaatcagatgtttgatagctctacgtcaggtagcgacctttatttg
gagaagggggatatcgccctgtttgagcctccattcctagggtcagggtggacagtgctg
tcactagcagatgggtctagaggaaccaagcaaaaaccagctctggagccagtcataccc
tttcatgagtggtttctaaagtcctgcccagagactgtattagtgggtggtggaaaggac
actagtgaccttccattacagattgcagtaggggtctgtgagaccacagaggaacatgat
gctgatggaccagatgaactgagtttccaggctggtgagcgtatcatcatcctgggactg
ctggtggcctgttttgaatggtttatgggaaaatctgagaaaactggggatattggacta
gtcaaaaccaacctggtcaaagcaaccagttcattttgtgaatcatctgacatattcttg
aaagacgaggacagacaaattattaccttggatcaggacaaaattaaagaggagactatt
tctttattgaagaaaatatgccagtgtgatgtgggcacaaactacaaacttgatctggca
aaagaaattccaggatcagttcaaaacaagactcaagaagtgaacaatctaaaacagaaa
gtcaactgcattttgagtaaggtagatgagaatcaaagaaataaggattcatcagtcagc
atcaagcaccagatggagaaagaagttaatgatacagaggaatcctgggaacctccccgt
ttttctgtctgctccgagcaggacagcaccagtccagatggacatcatgctctcctctca
ttcttgagcagccgtgaccaccagccagagttcatgctcttgtacagcgcatacccagaa
ttcctcatctcacattttgagggtcactctgatgaggaggatatagtggtgtatttaggc
atagcccgagaattggcaagaaagaagcgcgtctcatgggcgcagagccgaatctgtttt
cttcttggacagctttgtgcagggaggtcaaagttctctcaagctcgggtttattatgag
gaagctttgaatgtacccagggattgtttcacagacatgtttctgctctctgccatttac
tccaacctggcactcatctacctaacacagaagaaccatgaaaaatttttcactatgtca
gagcgcttgtctgctttgttgatggctgtccctgattgcttgtttggctgcgaggaccct
gaggtattaaagtatgtactaaaaaaggccatccttgccaagaatcagcctgccgaggcc
cgagcctgcttcatcctggctaagctccacctgaagctcaaagacggcatgagtgcaatc
ccgttcatcgaaaggcttttgacccttgctgatgaggttcccgaagcatgtgatgagacc
ctgagccatgcttttctggtgttagcaagactctacagtgaccagagtctgccaagtttg
gctgaaagctgcacacggcgagcatcacttcaggtaggagccactgcttcacactgtctt
tgtggtgtctcactgctgatggaaaatgcactggagctgtatggagtggttgtcccaaca
caagtggctccatacctgacccgtgccgctgctttagtgtcccccggcgaagagcctgcg
ctgggtcacgtccacgctctgtgtttgtcctggctcttccatagacacagcatgcccgac
agagctgttcgctacatgctcactgtcctcgaccacagcaacatgtccagcgttggccag
tcagacactactgctgctcttatatggatggcatggctgtacatctgcaaccagcaaccc
ggcaccgctctggaagtgctggatgctgtactgtcatcactccccgagcactgtaccaca
cagctggaaggtgtggtttacaacatgcgggccatttcatacagacattcagctgacatc
cgacaggccgctgagagttaccgggcagcaatcgagatatgcgaggagtttgaggacaga
cataactgggccatagcgttggccaactgtggattcatgtgtttgcaaatcaaggcaaaa
agactggcagaagaatatctcactcagtcagtggagctgttctctgagcttgaggatgaa
gggcatgaactcagttttatttctgtgcttcttgagttaggaagacactttatttcccag
ggaaaacatgagaatgggaagatctactacgaatgggccctgctgactgcaatgtacatc
ggtcacatggatagccagctgcaagccacacgtcacctgtgtcagctatacgaagaggtg
tgtccggatgaagcccagtgtatcatctacaacgagcaccagctgaaccttctccagcgg
ataggagacaagagcttagagggagagatactggagaagatcagccagctgtacctgaac
ctggccaccgagaaagccaacagagctgctttagactacaccaaacagagcctgggcatc
ttcattgacttgggcagaaaacgtaaggaggctcatgcctggctacaggcagggaagatt
taccacatcctccaacagacagagctagtggacctctacgtgcaggtagcccaggacatg
gccttgagcacaggagacacactcttcaccctggagatgttggagacagctggggatgtt
ttcttcaacagttcacaggacagggagaaagccatctgtttttacagggaccgagccctt
cccatcgcggtgaagacaagcagtgtgcgctctcagctccggttgtgtaataagctttca
gagcttctgctgcagctgggccagtgttcagaggccattgagtacactcaaactgcatta
gacattagcgtgtctctggctgaccatttaaacgaacgggtggcattccatcgcctcgcc
acattgtaccattgtctgggtcagtttgaaatggcagagcaccactttctgaaagccctg
tccctgtgtccctcacccctgcagtatgatgaggaagccctgtactatgtcagggtttac
caaacacttggagacatcatcttctatgatgtaaaggacccatttgatgctgctggctat
tatcacttggccttggctgctgcgatggatctgggcaacaagagatctcagctagagctg
tgcactcgattggccaccatctaccacaactttctcatggaccgtgaactctcgctgttc
ttctaccagcgagcgcgagctttcgctaatgacctccacattcgtcgtataaacctggct
ccagactacagtttcaggaccacaaacaagtacaaaaacacaataactggggcaacaaga
tag
DBGET
integrated database retrieval system
