Ctenopharyngodon idella (grass carp): 127516636
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Entry
127516636 CDS
T08802
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
127516636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cide03000
]
127516636
Transcription factors [BR:
cide03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
127516636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Sox17_18_mid
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
127516636
NCBI-ProteinID:
XP_051757379
LinkDB
All DBs
Position
7:complement(48199850..48203993)
Genome browser
AA seq
344 aa
AA seq
DB search
MSSPDAGYASDDPSQTRGTSSVMMPGERQCAWVDPLSPLSDSKAKHETPGRAKTEPRIRR
PMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPMVDKRPFVEEAERLRAKHMQ
DHPNYKYRPRRRKQVKRTKRLDSGFLLSGLGDAQTLLGMESVGYSGLPPYCESQPSFEPY
SLPTPDPSPMDAGATGFSGHLQDSHQQSSCRYHHQFQEHGMTYTHTDPNQTQLNLNQQLF
NESHNNSISHSIFNRSHQAFPSTLDIFSNSQPKRPYEESSFHPHKHTLTDPHSQAGAGQM
VDEVEFDQCLIYGVPQAPLQGSELISTVLSDASNAVYYCSYSNS
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcccgatgcgggttacgccagtgacgacccgagccagacccgaggcaccagc
tcagtcatgatgcctggcgagaggcagtgcgcgtgggtggacccgctcagtccgctctct
gactccaaagcaaagcacgagactcccgggcgcgcgaagaccgagccgcgcatccgcagg
ccgatgaacgcgttcatggtgtgggcgaaagatgagcgcaagaggctcgcgcagcaaaac
ccggacctgcacaacgcagagctgagtaaaatgctaggtaagtcatggaaagctttacca
atggtggacaaacgtccgtttgtggaggaggccgaacgcctgcgagcgaaacatatgcaa
gaccacccgaactacaaataccggccacggcgtcgcaaacaggtgaagcgaacgaagcgc
ctggactccggctttctgctgtcagggctgggcgacgcgcagacgctcctgggcatggag
agtgtgggttattcaggactgcctccgtactgcgagagccagccgtcgttcgagccctac
agcctgccgacacccgacccgtctccgatggacgccggggccacggggttttctggccat
cttcaggacagtcaccagcagtcatcatgcagataccatcaccagtttcaggaacacggc
atgacttacacacacactgatcccaaccaaacgcagctcaatctcaatcagcagcttttt
aatgagagtcacaataactccatctctcacagcatttttaacagaagccatcaagctttc
ccttcaactttagacatcttctccaactctcagccgaagcgtccctatgaggaatcttcc
tttcatccacacaaacacaccctgactgatccacactcgcaggccggtgccggtcagatg
gtggatgaggtggagtttgatcagtgtctgatttacggggtccctcaggcacctctgcag
gggtccgagctcatctccaccgtactgtctgacgccagcaacgccgtgtactactgcagc
tacagtaactcctga
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