Ctenopharyngodon idella (grass carp): 127516814
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Entry
127516814 CDS
T08802
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cide03000
]
127516814
Transcription factors [BR:
cide03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
127516814
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
127516814
NCBI-ProteinID:
XP_051757672
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All DBs
Position
7:4273559..4525830
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AA seq
817 aa
AA seq
DB search
MPSSSEVVCEEQRRTGAAKQAEGDSIRIMSSKQATSPFASAPDGGEDGLNQERMSWEKEE
NSESLVTPQLPLHNLLHNKPPPEELQPISSSVPPESDWDSLMSAQQRMESDSNKVCSLYS
FRNNSTSPHKPEEGARERGDLLSSSAFGTPERRKGSLADVVDTLKQKKLEEMTKTEQDES
SCMEKLLSKDWKEKMERLNTGELLGEIKGTPESLAEKERQLSTMISQLISLREQLLAAHD
EQKKLAASQMEKQRQQMELARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMI
PIFPHDQRTLAAAAAAQQGFLFPPGMSYKPGDNYPVQFIPSTMAAAAASGLNPLQLQQLY
AAQLASMQVSPGAKMPPLPQPPNSAGPISPSGLKNEKRASTPLAQVKEEGTQPLNLSARP
KTAEPVKSPTSPTQSLFPGSKSSPNSLSKSGGIPSPIGGMGRGSSLDILSSLNSTALFGD
QDAVMKAIQEARKMREQIQREQLQHHQQGMEAKLSALSSMGLNNCRADKERSHYDSLGHH
LGKLGEDGKIGHRVIDLTRPEDFDGCKELNGSADKPHQYYCWPTGGASTTEARVYREPRG
RNSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNQEKQPYYEE
QARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQFFTVGQQPQT
QIPITTSAGVVYPGAITMATTTPSPHMTSDCSSASASPEPTIPVIQSTFNMKMEPGTMVP
NDPVNGEDEMDMYEDFEDEPKSDYSSENDTQEPVSAN
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgccatccagctctgaagtggtgtgtgaagaacagagaaggacaggagcggccaaacag
gctgagggggacagtatcagaatcatgtcttccaagcaagccacctctccattcgcctcg
gcccctgacggaggtgaggatggattgaatcaggagcgcatgtcctgggagaaggaagag
aactctgagtcactagtcacccctcagctgcccctgcacaatctgctccacaacaaacct
cccccggaggagctccagccaatcagcagcagcgtgccgcccgaatccgactgggacagc
ctgatgtcggcccagcagcgcatggaatcagacagcaataaagtatgctccttatactcc
ttccggaataactctacctctccacacaagccagaggagggggccagggagcgcggcgac
ctgctgagcagctcagccttcggaacaccagagcgccgcaaaggaagcctggccgatgtg
gtggacacactgaaacagaagaaactagaggagatgacaaagacagagcaagacgaatcc
tcctgcatggaaaaacttctttctaaagactggaaagagaagatggaacgactcaacacg
ggcgagctgttaggagaaattaaaggtactccagaaagtcttgcagagaaggagcgacag
ctctccaccatgatctcacagctcatcagcctgcgagagcagctcctggctgcccatgat
gagcagaagaaactggccgcctcacagatggagaaacaacgtcagcaaatggagctggca
cgccaacagcaagagcagattgccagacaacagcagcaacttctgcagcaacagcacaaa
atcaatctcctccagcagcagatccagcaggtccagggtcacatgcctccgctcatgatc
cccatttttccacacgaccagcgcactctggcagcagccgcggcagcccagcagggcttc
ctctttcccccaggcatgtcctataagccaggtgataactacccggtgcagttcattcca
tccacaatggcagctgctgccgcgtcaggactcaatcctctccagctccagcaactctac
gccgcccagctggccagcatgcaggtctctccaggagccaagatgcctccgctgccccag
ccccccaattctgccgggccgatctccccatctggcttgaagaacgagaagagggcctca
acccccctggctcaagtcaaggaggagggaacgcagcctctcaacctctctgcccggccc
aaaacagctgagcccgtcaaatcccccacatccccgacacagagcctctttccaggcagc
aagagcagcccgaacagcctgtccaagagcggaggcatccccagccccatcggaggaatg
ggtcgtggctcgtctctagacatcctgtccagcctgaactcaacagcgctgtttggagat
caggatgcagtgatgaaggccatccaggaagcgaggaagatgagggagcagattcagaga
gagcagcttcagcatcatcagcagggaatggaggccaagctgtctgccctctccagcatg
ggcctgaacaactgcagggctgataaggagaggtctcattatgacagccttggccatcac
ctgggcaaactaggtgaggatggaaagatcggtcacagagtcatcgacctcaccaggcca
gaggattttgatgggtgtaaggaactgaatggctctgcagataaaccacatcagtattat
tgttggccaacaggaggcgccagcactaccgaggcacgggtctacagggaaccccgggga
aggaacagcaacgaacctcacatcaaacggcccatgaacgccttcatggtctgggccaaa
gatgagcgccgcaaaatccttcaggccttcccagacatgcacaactccaacatcagcaaa
atcttgggatctcgctggaagtccatgacgaaccaggagaaacaaccgtattatgaagag
caggcacggctcagcaagatccacctggagaagtatcccaactacaagtacaagccccgg
cccaagcgcacatgcattatcgacggcaagaagctgcgcatcggcgagtacaagcagatg
atgaggtcgaggaggcaggagatgaggcagttcttcactgtggggcagcagccacagacg
cagatccccatcaccaccagcgcaggtgtcgtctaccccggtgccataaccatggcgacc
actacgccctcccctcacatgacatcagactgctccagtgcctcggccagccccgagccc
accatccccgtcatccagagcaccttcaacatgaagatggaaccaggcaccatggtgcct
aacgaccccgtgaacggagaggacgagatggacatgtacgaggactttgaggacgagccc
aaatcggactacagcagcgagaatgacacacaggagccggtcagtgccaactga
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