Ctenopharyngodon idella (grass carp): 127517056
Help
Entry
127517056 CDS
T08802
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cide01009
]
127517056
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127517056
04131 Membrane trafficking [BR:
cide04131
]
127517056
03036 Chromosome and associated proteins [BR:
cide03036
]
127517056
Enzymes [BR:
cide01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
127517056
Protein phosphatases and associated proteins [BR:
cide01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127517056
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
127517056
Membrane trafficking [BR:
cide04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
127517056
Chromosome and associated proteins [BR:
cide03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
127517056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
127517056
NCBI-ProteinID:
XP_051758104
LinkDB
All DBs
Position
8:30201446..30218097
Genome browser
AA seq
1091 aa
AA seq
DB search
MDPVPVSKGSTRSPRGKPETERENNNPNHKKRLQDARRKGRMDRSKAEEEMSNELQNLDV
RGKTKAAGTGLVYVDAFTHFHCLWDASHPECPARVSTVMETLETEGLLGRCVRVEARAVS
EDELLLVHTKDYVELMKSTQKMTEEELKTLSDKYDSVYLHPEFFTAACMAVGSVLQLVDK
VMTSQLRNGFSINRPPGHHAQAEKMNGYCMFNNLAIAARYAQKQHGVERVLIVDWDVHHG
QGIQYIFEEDPSVLYFSVHRYEDGSFWPHLKESDSSSVGSGAGQGYNINLPWNKVGMEDG
DYITAFQQLLLPVAYEFQPQLVLVAAGFDSVIGDPKGEMRVSPQCFSILTHMLKGVAQGR
LVLALEGGYNLQSTAEGVCASVRSLLGDPCPHLTSPGAPNESALKSISKTISALYPFWKS
LQTFEGGPLSDATPLPAPVCAEVKVSSPITGLVYDQKMMHHHNMWDGHHPELPQRISRIF
SRHEELGLLSRCHRIPARLATEEELALCHSSEHISTIKSTEHMKPRDLHRLGNNYNSIYI
SNESYTCALMAAGSCFNSVQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTAR
YAQSITHKSLRVLILDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGTFFPNSEDANYDKV
GQGKGRGYNVNIPWNGGKMGDPEYMAAFHHLVMPISREFAPELVLVSAGFDAARGDPLGG
YQVTPEGYAHFTHQLMSLAAGRVLVILEGGYNLTSISESMSMCTSMLLGDSPPPLDHPPP
PKTSAAVTINNVLRAHTPFWSSLRIQIPESLRLSLPSPKPKGKRASCGKGKKSPRQSTSA
QSPGQNPQHLEQSGLDGLTEDLLSLNLNTSTSSNTSPTSVAIGGARRKVKPNPQRNSAGQ
ESGSPIKPTSEKARDGDSTHAEITAVKAETPDRSIPVSVVTGNSAAMYDQESSGLDAACG
QTVTAVIEVFGTQATDLDGMHVVHPLPWCPHLESVRPVPSGGIDVFLPCEECGGDTENWI
CLFCYKVLCGRYVNQHMVTHGQVSGHPLVLSFADLSVWCYACESYVHNKVLHEAKNAAHL
VKFGEEIPPFN
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgttccagtttccaaaggttctactcgttctccaagaggaaaaccagaaacc
gaaagagaaaacaacaacccaaaccataagaagagactacaggacgcacggaggaagggg
agaatggatcggagcaaagcagaggaggagatgagcaatgaattacaaaacctggatgtg
cgtgggaagactaaagcagcaggaaccggtcttgtctacgtagatgccttcactcacttt
cactgcctctgggacgccagtcacccagagtgtccagcgagagtgagcactgtaatggag
acactggagacggagggtctgctgggacgctgtgtgcgagtagaggccagagctgtatca
gaagatgagctattactcgttcatacaaaggattatgtagagctgatgaagtccacacag
aaaatgacagaggaggagctgaagaccctctctgataaatacgactctgtctacctgcat
cctgaatttttcactgctgcctgtatggcggtgggatcagtcctccagctggtggataaa
gtgatgacatcacagctgcgtaacggcttctccatcaacaggcctccaggtcaccatgca
caggcagaaaagatgaacggctactgtatgtttaataatctggccatagcagcgcgctac
gctcaaaaacagcatggagttgaacgagttctaattgtggattgggatgtgcatcatgga
cagggaatccagtatatttttgaagaggatcccagtgtgctgtatttctcagtgcacaga
tatgaagatggctcgttctggccgcatctcaaggagtctgacagcagctcagtgggttca
ggagctggacagggctacaatatcaacctgccctggaacaaggtggggatggaggatgga
gattacatcacagctttccagcagctcctcctgcctgtggcgtatgagtttcagcctcaa
ctggtgttagtggcggccggctttgactctgtgatcggtgacccaaagggtgagatgcga
gtgagtccacagtgtttctccatcctgacccatatgctgaaaggtgtagcacagggccga
ctcgtgctggctctggagggtgggtataacctccagtccacagcagagggtgtttgcgct
agtgtgaggtcactgctgggtgacccttgccctcacctgacctctcctggtgctccgaat
gagagcgccctgaagtccatctcaaagaccatctctgccttgtatccattttggaagagt
cttcagacttttgaggggggtcctctgtctgatgccactcccctgcccgctccagtatgt
gcagaagtgaaggtttcctctccaatcactgggctagtttatgaccagaaaatgatgcat
catcacaacatgtgggatggtcatcatccagagctccctcagagaatttcacggattttt
tcccgacatgaggagttgggcctgctgtcccgttgccatcggataccagctcgcttagca
acagaggaagagctggcactctgtcacagttctgagcacataagcactattaagagtaca
gagcacatgaaacccagagatctgcaccgactggggaacaattacaactccatctacatc
agtaacgagagctacacctgtgccctgatggctgctgggtcatgctttaactccgtacag
gccatactcacaggccaggttagaaacgccgtggccatagtccgtcctcctggccatcat
gcagagaaagacacagcttgtggtttctgtttctttaatacggccgctttgaccgcacgc
tatgcccagagcatcacacacaaatcgctgcgtgtcctcatcctcgactgggatgttcat
catggaaacggcacacagcacatctttgaggaggatgacagcgtcctgtacatttctctg
catcgatatgaagacgggacatttttccccaactcggaggacgctaactatgataaggtg
gggcaggggaaaggccggggatacaatgtcaacatcccctggaatggaggaaagatggga
gacccagaatacatggcagctttccatcacttagtgatgccaatatccagagagtttgcc
ccagagctggtgctggtgtctgctgggtttgatgcggcacggggtgatccgttaggaggg
tatcaggtgaccccagagggctacgcccacttcacccatcagttgatgagtctggcagca
ggaagagtgctagtcatactggagggaggatataacctcacctccatctctgagtccatg
tccatgtgcaccagtatgttgctgggagactcccctccacctctagaccatccaccccct
cccaagaccagtgctgctgtcaccattaacaacgtcctgcgtgcccacacccccttctgg
agctccctgagaatacagattccagagtcacttcgtttatctttgccgtctcctaaaccg
aaaggcaagcgggcatcatgtggcaagggcaagaaatcgcctcgccagtccacctctgct
cagagtcccggacagaacccgcagcatcttgagcagtccggccttgatgggctcactgag
gatctgctttctctgaatctcaacacaagtacctcatctaacaccagtccaacatcagtt
gctattgggggagccagacggaaggtgaaacccaacccacagaggaattcagcaggccag
gagtcaggttcacccataaaacccacgtcagagaaagccagagatggagacagcacacat
gcagagattactgctgtaaaagcagagacacctgaccggtcgatcccagtttctgtggtc
actggaaattcagctgccatgtatgaccaggagagctctggtctagatgctgcttgtggt
cagactgtgacggcagtcatagaggtctttggaacacaagccacagatttggacggcatg
catgtggtgcacccgttgccatggtgcccacacttggagtcagtgcgaccggtaccctca
ggtggcattgatgtcttcctgccgtgtgaagagtgtggaggtgatactgaaaactggatc
tgcctcttctgctacaaggtgctctgcgggcgttatgtgaaccagcacatggtgacccac
ggacaggtgtcaggtcaccctctggtgctgagcttcgctgatctttctgtctggtgctac
gcttgtgagtcatacgtccacaacaaggtgctccatgaagccaaaaacgccgctcacctc
gtgaagtttggagaggagattcctcctttcaactaa
DBGET
integrated database retrieval system
