Ctenopharyngodon idella (grass carp): 127517324
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Entry
127517324 CDS
T08802
Name
(RefSeq) dmX-like protein 1 isoform X1
KO
K24155
rabconnectin-3a
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
127517324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cide04131
]
127517324
Membrane trafficking [BR:
cide04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
127517324
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
127517324
RAVE complex
127517324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_EML
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_Vps41
Beta-prop_IP5PC_F
VPS11_N
CENP-B_dimeris
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
127517324
NCBI-ProteinID:
XP_051758738
LinkDB
All DBs
Position
8:complement(33779608..33810399)
Genome browser
AA seq
2928 aa
AA seq
DB search
MNLHQVLTGAVNPGDNCFSVGSVSNRPFTAYASGCDIVILGSDFERIQIIPGAKHGNIQV
GCVDCSLQGGQIAASYGNIVCVFEPVEVSPQGKAQKQKLNYHWQKSGQFALQSVAHILTW
HPTGTCLLTGSACLQLWCNVRSSADPEDKAAAADPQLSWRCIWQCKSAAPTHFIKFSPDG
EFFATAGQDDCLVKVWYSASKWQADITKFFTPLDLRSGAEINFSFIYLAHPRSVTGFSWR
KTSKYMPRGGVCNVLLTCCKDSVCRLWAETLLPSDCLLSGHRHNHCNNDLPKTNNMKKSS
SNTLNQSPLELNLKPSWREEVRCLSQLSYTGPLPQQQNKHYAHRTNILHANALCHFHIAA
SINPATDIPLLPSISSMNGSDEEEPGGSFTVHWLNNKELHLTLSMEVFLQQLRSNGEQNG
PGERYDEDEEGNSADGAAASSVALPTVAVDHQVDVLLGDWNRGADMLFSIHPMDGSLLVW
HVDWLDEYQPGMFRQTQVSFVSRIPVAFPTGDANSLSRSVVMYACNKNVDLAIQHGRQRP
AGLPHSSSALIGLSQNKPSSNSLRLSIFTPSVLMISKHADGSLNQWAVSFAEDSAFSTVL
SVSHKSRYCGHRFHLNDLACHSLLPLLLTTSHHNALRTPDGDATLMRPPDPSRRSRVSSG
GVSQDPNAIYSELILWRVDPVGPLSFSGGVSELARINSLHASAFSNVAWLPTLIPSNCLG
VYGNSPSACFIASDGHSLRLYQAIIEAKKLLSELSNPDISKYVGEVFNIISQQSTARPGC
IIELDAITDFQGKETQLLHVFEEDLILGNEKSDDCLQESVPSQTLFSARFFLVVVEIAQS
GRSLLHMWHLQLDAVPVIMEQTQTPAKSEIASPSPTNCSQFNFETAGSPQAQRSKLNTSN
LQSACRLTLTNTKVFSQELDLPQGVEVIRVTPAAGHLSSSSLQPAGRAPYLLATSCSDGT
VRFWRCSAVSDPDSSEEPSYIWEEWPLLVEEGVASSSALSVCGQLMGLSCCHTSRVAVAH
RSDGPGSSEPLMHVSIFQCDSTGGSQWILEQILKISGSYSPSSNDCDKSLMVLRDGLVNN
NCLALGGKRQVHLDWVSREDGSHILTVGLGSKLYMYGMLSGKPPDLGLSDSSREHRCSRL
VLLRVVDLVSSVEGSLPIPVSLSWVRDGILVVGMDCEMHVYSQWQPPAPAKPALTTGENS
IGTGSVTSLKQEGLSPNPSKKTLTRSMTSLAQKLSGKRTVYDLPAEMEDSGLFEAAHHLF
PTLPQYHPVQLLELMDLGKVRRAKAILSHLVKCIAGEIVSLKDTTVNQERRLRSLTISAS
GSTTRDPKMFSKGESSDYTEIDSIPPLPLYALLAADDETAPSAKERTDSASAHGASASSQ
SVAYDELFSSTGVSADDLDPFDADEEDDNAKVIDLSKYSPTFFGSEHAQVLSGHLLHSSL
PGLTRMEQMSLMALADTIASTSTDIGESQGKGQGGETLDECGLKFLLAVRLHTFLLTSLP
PAHRAQLSCQGLSTCHYAWAFHSEAEEELLNMLPALQKGDPTWPDLRAMGVGWWLRSTNK
LRRCIEKVAKAAYQRNNDPLDAALFYLAMKKKAVVWGLYRSQQNAKMTAFFSNNFSEDRW
RKAAMKNAFSLLGKQRFQHSAAFFLLAGSLKDAVEVCIEKMQDLQLALVICRLYESEFEM
SCTYKRILQRHVLGQDHQMAAHQDPFLRSMAYWVLDDYSRALDTLLEQPNEGTAGTSPCN
PDVFNFYTYLRTHPLLLRRHFGSSDKAKVGLTAEGRVADSITLTERRLFFTAAHAHLQAG
CPMLALEVLSKMPKVVKRSKARESPSMSLSASEGLEKPVLNGFQSVSSLSSPRDDSQSDS
VLSFDWSQPSVTLQDEPLDLKWDSEDSDVEESGLAMKTIHPENNGDAPDTASTPTDHSES
LALTEDILAARLKFSSCLKILTTELRTLSTGYELDGGKLRHQLCHWLEREVAALQNCCGY
NPFLQHLPEGISADLSQLEDLEVQGAAEQAREVQRRRRLWLKRNQPLLRIFLSYCSLHGS
HGGGLASVRMELILLLQESQQDDALQISVPALQHVSIPLLLAWTANSKTVVANPIVHLTN
LTHDILHTINALDAPPQPDVVNNEIYVMHTLAASLSACIYQCLCDGHSYSHVNPFTGITY
QSVLLTHQTPVRSVSMEEAVLPNTSPAQWPGVSVLMQLLNTSGDENQPGLSVLLCEILTA
VFLSLFVHGLATHSTHELFRIVAHPLNAKLWVAVFGGGARVPVAEKPSSPTVEDAERKQR
RFRLRSSRSSSREVPDSPVSPRPVMEPETSICKERFVPPELSIWDYFIAKPYLPPSASRV
EYDSEESQDSEDEEDDDDEEDSFDPNSPLAEHSNSNSYSWCLMRLAMVQMVQFSLKTFYP
TAGHDLLDLPVCSPLCHAALKTLQRWEQLLLKRLEIFGGPPSKFISTQLLDESVSSGPAL
LRHKALFEPSNTPFRSRRRSVLPVRRLWQYLVKQEEVQETFIRNIFTKKRDLNEETDSVL
LDSTHNQIEADLGYPGGKARIIHKESDIITAFAINKANRNCLVIASTHDIQELDVSSILA
TQVLTWIDDEAETEVKGTDDFLVVHARDDFGSLHGSTPYTHSSPGTPINMPWLGGLQTGR
GAAVLIKRNINNVRRMTSHPTLPYYLTGAQDGSVRMFEWGHSQQITCFRSPGNSRVTRIR
FNYQGNKFGIVDADGALSLWQTSTSGNTPKPYLTLQCHNKTANDFVFVGSSSLIATAGLS
TDNRNVCLWDTLVTPAYSLVHAFSCHDSGATVLALASKQQLLISGGRKGWISVLDLSLKV
QRQSFQAHDSPVKALAVDATEGSFISGSAEGNIKVWSMSTQTLLHTFTNEHARQSLFRNL
GTGVMQIETAPANHMFSCGADGTMKMRILPDALSVYGSGARNDVKFIM
NT seq
8787 nt
NT seq
+upstream
nt +downstream
nt
atgaacctccaccaggtgctcacaggtgctgtcaaccctggagacaactgcttctctgtg
ggcagcgtcagcaaccggccgttcacggcgtacgcctccggctgtgacatcgtcattctg
ggcagcgactttgaaaggatccagatcatcccgggagccaaacatgggaacatccaggtg
ggctgtgtggactgctcgctccagggcggacagatcgcggcatcgtatggaaacattgtt
tgtgtgtttgagccggtggaggtcagtccgcaagggaaagcacaaaaacagaagctgaat
tatcattggcagaagagcgggcagttcgccctgcagtcagtcgcacacatcctgacgtgg
cacccaaccggtacgtgtcttctgaccggctcggcgtgtctgcagctgtggtgtaacgtg
cgttccagcgcagatcccgaagacaaggctgcggccgccgatcctcagctctcctggaga
tgcatatggcaatgcaagtccgccgctccgactcacttcatcaagttttccccggatgga
gagttttttgcgacagcaggacaggacgactgtttggtgaaagtgtggtacagcgccagc
aaatggcaggcggacatcaccaaattcttcaccccgcttgacctgcgctctggggcagag
atcaacttctccttcatttacctggctcaccctcgatccgtcaccggcttctcctggagg
aagaccagcaaatacatgcccagaggcggcgtgtgtaacgtgctgctgacctgctgcaaa
gacagcgtctgtcgactgtgggcggaaacgctgctgcccagcgactgcctgctgtccgga
cacagacacaatcactgcaacaacgacctgccgaagacaaacaacatgaagaagtcctcc
agcaacaccctgaaccagagcccgctggagctgaacctgaagccttcgtggcgagaggag
gtgcgatgtttatctcagctctcgtacacgggtcctctgccacagcagcagaacaagcac
tacgcacaccgaaccaacatcctgcacgccaacgccctgtgccacttccacatcgctgcc
agcataaacccagccacggacatccctctgctgccctccatctcgtccatgaacggctct
gatgaggaggaaccaggaggctcgttcactgttcactggctcaacaacaaagagctgcac
ctgacgctgagcatggaggtgtttctacagcagctcaggagcaacggcgagcagaacgga
cccggagagcgctacgatgaggatgaggaggggaacagcgctgatggtgcagctgcgagc
tccgtcgctctgcctacggtggctgtagatcatcaggtggacgtgctgctgggcgactgg
aacagaggagcagacatgctgttcagcatccacccgatggacgggtcgctgctggtgtgg
cacgtcgactggttggacgaataccagccaggcatgttccgacagacacaggtttctttc
gtgtccagaattcccgtggccttccccaccggtgacgccaactctctcagccgcagcgtg
gtcatgtacgcctgcaacaaaaacgtggacctggccatccagcacggacgtcagcggcct
gcgggtctgccgcactcttcctccgccctgatcggcttgagtcagaacaaaccctcctcc
aacagcctgcgcctcagcatcttcacccccagcgtcctgatgatctccaaacatgccgac
ggctccctcaaccaatgggctgtcagcttcgctgaagattcggccttctccacggtgctc
agcgtctctcataagtcgcgatactgcggccaccgcttccacctcaatgatctggcctgt
cactctctgctgcccctgctgctcaccacgtcacaccacaacgccctgaggacgcccgac
ggcgacgccactctgatgcgcccgccggacccgtcccgcaggagcagagtgtcgtccggt
ggcgtctcccaggaccccaacgccatctacagcgagctgatcctgtggcgggtggatccg
gtgggtccgctgtcgttctctgggggcgtgtcagagctggccaggatcaactcgctgcat
gcgtcggccttctctaacgtggcctggctgcccacgctcatccccagcaactgcctcggt
gtgtatggaaactcacccagtgcctgcttcattgcaagtgacggacactcgctgagactg
tatcaggccatcatagaggccaaaaaactgctgagtgaactctcgaaccctgacatctcc
aaatacgttggagaggtgtttaacatcatcagtcaacagtcgacggccagaccgggctgc
atcattgagctcgatgccatcacagactttcaggggaaagagacgcagctgttgcatgtg
tttgaggaggacctgatcttgggaaatgagaaatcggacgattgcctgcaggagtctgtt
cccagccagactctcttctccgctcgcttcttcctggtggtggtggagatcgctcagagc
ggcaggtcgctcctgcacatgtggcatctacagttagacgcagttccagtcattatggag
caaactcaaactcctgcaaaaagtgagattgcgtctccatcacccacaaactgctcacag
tttaactttgagacggccggctcaccgcaggctcagagatcgaaactcaacacatccaac
ctccagagcgcctgtcgcctcactcttaccaatacgaaagtgttcagccaggagctcgac
ctcccgcagggtgttgaagtcatacgtgtaacacctgctgcaggacatttgagctcttca
tccctgcagccagctggacgggctccgtatctgctggccacatcctgctcagacggaact
gtccggttctggaggtgcagcgctgtctctgaccccgatagctctgaagaaccgtcatac
atctgggaggagtggcctttgttagtggaggaaggcgtggccagcagcagcgctctgagc
gtgtgcggtcagctcatgggtctcagctgctgccacaccagcagagttgcggtagcacac
cggagcgacggaccgggttccagcgagccgctcatgcatgtcagcatattccagtgcgac
tccaccggcggctctcaatggatactggagcagatacttaaaatcagcggctcttatagc
ccgagtagtaatgactgtgataaaagccttatggtactgagggatgggttggtaaacaac
aattgcttagctcttggcggtaagaggcaggtccacttagactgggtctccagagaagac
ggttctcatatattaactgtgggtctgggatccaaactttacatgtacgggatgctatcg
ggaaaacctccagatctgggactgtccgatagcagcagggagcaccgctgttcccgcctg
gttcttctcagagtggtggatttagtgtcgtctgttgagggttcgctacccattcctgtc
tctctgtcttgggtgcgagatgggatcttagtagtcgggatggactgcgagatgcacgtc
tactcccaatggcagccacccgccccggccaagccggcgctcaccaccggagagaacagt
atcggtactggcagcgtgacatctctgaaacaggagggacttagtccgaatccttctaaa
aagactctcactaggtccatgactagtttggctcagaaactcagtggaaagagaaccgtg
tacgacctcccagctgagatggaggattctgggttgtttgaggctgcgcaccaccttttt
cccactctgccccagtatcatccggtacagcttttggagctcatggacctcggaaaggtg
cgacgggccaaagccatcctgtctcatctggtgaagtgcatcgccggagagatcgtgtct
ctgaaggacacgactgtcaaccaggaacgccgtctgcgctcactcacgatcagcgccagc
ggaagcacgaccagagacccaaagatgtttagcaagggcgagagctcggactacactgag
attgactctatcccgccactgccgttgtatgcgctgttagccgccgatgatgaaacggcc
cccagtgccaaagaaagaacggacagcgcgagcgctcacggagccagtgcatccagccaa
agtgttgcttacgatgagctcttctcgagcaccggtgtcagtgcggatgatttggaccct
tttgatgcagacgaggaagatgataatgccaaagtcattgatctgtcgaagtacagcccc
acgtttttcggctccgagcatgctcaggtgttatccggacacctgcttcactctagtctg
ccgggcctgacgcggatggagcagatgtctctgatggccttggcagacaccattgcctcc
accagcaccgacattggagaaagtcaagggaaaggccaaggtggagagacactggatgaa
tgtggactgaagttcctgctggctgttcgcctgcacaccttcctcctgacatctctgcct
ccggctcatcgagctcagctttcctgtcaaggattgtccacctgccactacgcctgggcg
ttccactccgaggctgaagaggagttgctcaacatgcttccagccctgcagaaaggtgat
cccacgtggccggatctgagagctatgggtgtgggctggtggctgcggagtactaataag
cttcgcagatgcattgagaaggtggcaaaagctgcttatcagagaaacaacgacccttta
gacgcagccttgttttatctggccatgaagaagaaagctgtggtttggggattgtacagg
tctcagcagaacgcgaagatgactgcgttcttcagcaataacttcagtgaagatcgctgg
aggaaagcagctatgaagaacgctttttctctgctcggaaaacagcgcttccaacattct
gcggctttctttctgctggctggatccctgaaagatgctgttgaggtttgtatagagaag
atgcaggaccttcagctggctctggtcatctgtcgactgtacgagtctgagtttgagatg
tcctgcacttacaaacgaatcctgcagaggcatgtattgggtcaggaccaccagatggcg
gcccaccaggacccgttcctgcgcagcatggcttactgggtcttagacgactatagcagg
gccctggacactctgctggaacagcccaatgaaggaaccgccggcacatctccctgtaat
cctgatgtcttcaacttctacacgtacctccggacgcacccgctgctgctgcgccgtcac
ttcggctcctcagataaagctaaagtgggtctgacggctgagggccgcgtggccgactcc
atcaccctcaccgagaggagactcttcttcaccgctgctcacgcacatctacaggccggc
tgtcccatgctggctttagaggtgctctccaaaatgccgaaagtagttaagcgatccaag
gcacgtgagagtccgtccatgtcactgagcgcctctgaaggtctagagaagccggttctc
aacggcttccagtcggtgtcctcgctctcgtctcccagagacgacagtcagtcggactcg
gtgctcagtttcgactggagccagccctccgtcactctgcaggatgagcctctggacctg
aagtgggactcggaagactctgacgtagaagaatcgggactggcgatgaagaccatccac
ccagagaacaacggagatgctccggacacggcgtccacccccacggaccacagcgaatcg
ctcgccctgactgaggacatcctcgccgcccggctgaagttcagctcctgcctaaagatc
ctgaccacggagttacggacgctctccacgggctacgagctggacggagggaagctgcgg
catcagctgtgccactggctggagcgagaggtggcggctctgcagaactgctgcggttac
aaccccttcctccagcacctgcctgagggcatctcggcggacctgagccagctggaggat
ctggaggtgcagggcgcagcggagcaggccagagaggtgcagcggcggcggaggctgtgg
ctgaagaggaaccagcccttgctgcggatcttcctcagttactgcagcctgcacggctct
cacggaggaggactggcctccgtcaggatggagctcattctgctgctgcaggagtctcag
caggatgatgctctgcagatctctgttcccgctctgcagcatgtatctattcctcttctt
ctggcatggaccgccaactccaaaacagtggtggccaatcccatagtgcacctgaccaat
ctcactcacgacatactgcacaccatcaacgctctcgatgcgcctccgcagccggacgtc
gtcaacaacgagatctacgtgatgcacacgctggcagcttccctgtcggcctgcatttat
cagtgtctctgtgatggacacagttacagccatgtaaatccgttcacgggcatcacctac
cagagtgtcctgcttacccatcagacccctgtgaggagtgtcagcatggaggaggccgtc
ctgcccaacacttctcctgcgcagtggcccggtgtgagcgtcctgatgcagctgctgaac
acgtccggagacgagaaccagcccggattgtctgtgcttctgtgtgagattctgaccgct
gtcttcctcagcttgttcgtccacggcttggccacacactcaacacacgagctcttccgc
atcgtcgctcacccgctcaacgcaaagctctgggtggccgtgttcggcggcggcgctcgt
gttcctgtggcggagaaacccagctcacccacagtggaagatgcggagcggaagcagcgg
cgtttccggctacgctcgtcacgcagcagctccagagaggttcccgacagtccggtcagc
cccagacccgtgatggagccagaaacatccatctgtaaagagcgcttcgtgccacctgag
ctcagcatctgggattatttcatcgcaaagccgtaccttcctccgtccgccagccgggtg
gaatacgattccgaggaaagccaagacagcgaggatgaggaagatgatgacgatgaggaa
gattcttttgatcccaactctcctctggcagaacattccaacagtaactcgtacagctgg
tgtctgatgcgcttggccatggtgcagatggtgcagttcagcctcaagaccttctaccca
acggcaggtcatgacctcttagatctgcccgtgtgctcgccgctctgtcacgccgctctg
aagaccctgcagcgatgggagcagctgctcctcaagaggctggagattttcggaggtcct
ccatcaaagttcatctccacgcagctgctggacgagagcgtgtcgtcgggaccggccctc
ctgcggcacaaggccctgttcgagccctcaaacacacccttcaggtctcgccggcgctct
gtcctgcccgtcagacgactctggcagtatctggtcaaacaggaggaggttcaggaaacg
ttcatacgaaacatcttcactaagaaacgagatctgaatgaggagactgacagtgtgctg
ctggattccacacacaaccagattgaggctgatctgggatatccaggaggaaaagcgcgc
atcatccacaaggagtctgacatcatcacggcgttcgccatcaataaggccaatcgcaac
tgtttagtgatcgcctccacccacgacatccaagagctggacgtgtcctccatcctcgcc
actcaggtactgacgtggatcgatgacgaggcggagacggaggtcaaagggacggatgat
ttcctggtagtgcacgcacgggacgacttcggctcgctgcacggcagcacgccctacacc
cacagcagccccgggacgcccatcaacatgccctggctgggcggcctgcagacgggcaga
ggagccgccgtgctcatcaaacgaaacattaacaacgtgaggcggatgacgtcacacccc
acactgccatactatctgacgggggctcaggacgggagcgtgcggatgttcgagtggggt
cattcacagcagatcacctgcttcaggagtccaggaaactccagggtcaccagaatacgc
ttcaattaccagggcaataagtttgggatcgtggatgcggatggagcgctcagcctctgg
cagaccagcacctcaggaaacacacccaaaccctatctgacgctgcagtgtcacaataag
acggcgaatgactttgtgtttgtgggctcatcgtctctcatcgccaccgcaggcctgtcg
acagacaacaggaacgtgtgtctgtgggatacgctggtcacgccggcatacagtctggtt
cacgccttcagctgccacgactccggcgccacggttctggctctggcgtccaaacagcag
ctgctgatcagcggcggccggaagggctggatcagcgtcctggatctgagtctgaaggtc
cagcggcagagtttccaggcgcacgactcgcccgtcaaagcgctggctgtggacgccacc
gagggaagcttcatcagcggctccgccgaaggaaacatcaaggtgtggagcatgtcgaca
cagaccctcctgcacaccttcaccaacgaacacgcccgacagtcgctcttccgcaacctc
ggcacgggcgtcatgcagatcgaaacggccccggccaatcacatgttctcctgcggagcg
gacggcaccatgaagatgcgcattctgccggacgccctgagcgtttacggcagcggcgcg
aggaacgatgtgaagtttatcatgtag
DBGET
integrated database retrieval system
