Ctenopharyngodon idella (grass carp): 127518028
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Entry
127518028 CDS
T08802
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04510
Focal adhesion
cide04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127518028
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127518028
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cide00536
]
127518028
Glycosaminoglycan binding proteins [BR:
cide00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127518028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
127518028
NCBI-ProteinID:
XP_051760268
LinkDB
All DBs
Position
8:complement(22828952..22851777)
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AA seq
1488 aa
AA seq
DB search
MFRLVDSRTLLLLVATQCVLLSLVRCQQEDDQEDLGSCIQDGKQYADRAVWKPEPCRVCV
CDTGAVLCDEVICEDVTDCDNPIIPLGECCPICPAGTDEPIGSVGAKGQKGEPGDITDVV
GPRGPAGPMGPPGEQGPRGERGSKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPSGLGGNF
AAQMAGGFDEKAGVAQMGVMQGPMGPMGPRGPPGPPGAPGPQGFQGNPGETGEPGPAGAL
GPRGPPGPPGKSGSDGEAGKPGKPGDRGPPGPQGARGFPGTPGLPGIKGHRGHPGIDGAK
GEAGAAGAKGEAGSNGESGAPGPMGPRGLPGERGRPGATGAAGARGNDGLPGPAGPPGPV
GPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAK
GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERGVVGPQ
GAPGPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGVT
GPKGGTGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGAPGAPGEDGRPGPPGPLGARGQP
GVMGFPGPKGANGEPGKTGEKGLVGRPGLRGLPGKDGETGAAGPPGPSGPVGERGEQGQP
GPSGFQGLPGPTGAPGEPGKPGDQGVPGEGGAAGPTGPRGERGFPGERGGAGPQGLQGPR
GLPGTPGTDGPKGAIGPAGAAGVQGPPGLQGMPGERGAVGIAGAKGDRGDSGEKGPEGAP
GKDGARGLTGPIGPPGPSGPNGAKGETGAIGPIGTPGARGAPGDRGEIGAPGPAGFAGPP
GADGQPGIKGEQGESGQKGDAGSPGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGVTGFP
GAAGRVGPPGPNGNPGPAGPAGAAGKDGPKGVRGDAGPPGRPGDAGLRGPPGSPGEKGAP
GPDGPPGLIGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGSSGDRGPP
GPVGPPGLTGPAGETGREGNPGSDGPPGRDGAPGVKGERGNTGPIGAPGAPGAPGAPGSV
GPIGKQGDRGENGPQGPAGPPGPAGARGMVGPQGPRGDKGEAGEAGERGQKGHRGFTGLQ
GLPGPPGAPGDQGAAGPAGPSGAKGPAGPVGPAGKDGSNGQPGPIGPPGPRGRSGESGPI
GPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKGPDPLRYMRADEASSSLRQHDVEVDATL
KSINSQIEDIRSPDGSRKNPARSCRDLKLCHPEWKSGDYWVDPNLGSSADAIKVFCNMET
GETCVKPSTPKIPRKNWWSNKGKGQKHVWFGESMNGGFHFSYADSSQTPSTTSIQLNFLR
LLSTEATQTITYHCKNSVAYMDQATGNLKKAILLQGSNDVEIRAEGNSRFTYGVLEDGCQ
KHTGQWAKTVIEYKTQKTSRLPIVDIAPIDIGGADQEFGVDIGAVCFL
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattagtggattcacggactctcctgctacttgtagcaacgcaatgcgttttg
ctatcccttgtaagatgtcaacaagaagatgaccaggaagatttaggcagctgcatccaa
gatggcaagcagtatgcagaccgtgctgtatggaagccagaaccgtgccgcgtctgcgtg
tgcgacactggggcagtgctgtgtgacgaggtcatctgtgaggatgtgacagactgtgac
aatcccatcattccacttggagagtgctgtcccatctgcccagctggaaccgacgagcct
atcgggtcagttggtgccaagggacagaaaggtgaaccaggtgatattacagatgtagta
ggaccaagaggacctgctggcccaatgggacccccaggagagcaaggaccacgtggcgag
agaggatctaagggtgagaagggaagtcccggcccaagagggagagatggcgagcctggt
acacctggaaacccaggaccccctggaccaccaggacctagtggacttggaggaaacttt
gctgctcagatggccggaggttttgatgagaaggcaggagttgctcagatgggtgtgatg
cagggaccaatgggtccaatgggtccccgtggtcctcccggtccccctggagcacctggc
ccacaaggtttccaaggcaaccctggagagactggtgaacccggccctgctggtgccctt
ggaccccgtggcccaccagggccccctggaaaatctggaagtgatggtgaggctggcaaa
cctggtaagcctggtgatcgtggacccccagggcctcagggagcccgtggattccccgga
actcctggccttcctggaatcaagggacacagaggacacccaggtattgatggagctaaa
ggagaggctggtgctgcaggtgctaagggtgaggctggttctaatggtgagagtggtgct
cctggaccaatgggtccacgtggtctgcccggtgagagaggtcgtcctggtgcaactggt
gctgctggtgcccgtggtaatgatggtctgcctggtcctgctggtcctcctggtcctgtt
ggtcctgctggagctccaggtttccctggatcccctggttctaagggtgaagctggtccc
accggagctcgtggacctgagggtgcacaaggaccccgtggagaggctggaacacctgga
tcacctggacctgctggtgcatctggtaaccctggtactgatggtattcctggagccaaa
ggatctgctggtgctcctggcattgctggtgcccctggtttcccaggaccccgtggcccg
ccaggacctcagggagctactggacctcttgggcctaaaggacaatctggagaccctggt
atcccaggatttaaaggcgaggctggacccaagggagagcgtggtgttgtaggacctcag
ggtgcccctgggccatctggagaggaaggaaagagaggaccaagaggagagcctggttct
gccggacctctcggaccccctggagagagaggagctccgggtaaccgtggattccctggt
caggatggtctagctggagcaaagggtgcacctggtgatcgtggtgttccaggtgtgacc
ggaccaaaaggagggactggagatcctggccgcacaggcgagcctggtcttcctggagcc
agaggtctgactggacgccctggtgatgctggacctcaaggaaaagttggagcacctggt
gcccctggtgaagatggacgccctggtcctcctgggcctctgggagctcgtggtcagcct
ggagtgatgggattccctggacctaagggagccaatggtgaacctggaaaaactggagag
aaaggacttgttggacgccctggtcttagaggtttgcctggtaaagatggagagactgga
gctgctggtccacctggcccttctggtcctgttggtgagagaggagagcaaggtcagcct
ggtccgtctggcttccagggtcttccagggcctactggagcccccggagagcccggtaaa
cctggtgaccagggtgttcctggagagggtggtgctgccggtcccactggaccaagaggt
gaacgtggtttccctggtgagagaggaggtgctggccctcagggtctccagggaccaagg
ggacttccaggaactcccggaactgatggacctaagggtgccattggaccagctggcgct
gctggagttcagggccctcccggtctgcagggcatgcctggtgagagaggagctgttgga
attgctggagctaaaggtgacagaggtgacagtggagagaaaggacctgaaggtgctcct
ggcaaagatggtgcaagaggtttgactggtccaattggtccacctggtccttctggtccc
aatggcgcaaagggtgaaactggtgccattggcccaattggtactcctggtgctcgtggt
gcccctggtgatcgtggtgagattggtgcacccggacctgctggttttgctggaccacct
ggtgctgatggccagcctggaattaagggagagcagggtgagtcaggacagaaaggtgat
gctggatcccctggaccccaaggaccatccggagcacccggcccagtgggcccaactggt
gttacaggacctaagggagcacgtggagcccaaggagcccctggtgtcactggtttccca
ggagctgcaggaagagttggaccacctggccccaatggtaaccctggtcctgctggccct
gcaggtgctgctggtaaggatggtcctaagggagttcgtggtgatgctggtccaccaggc
agaccaggagatgctggactgcgtggacctcctggttctcctggagagaagggagcgcct
ggaccggatggtcctcctggtcttattggtccttctggtcctgccggtcttgctggtcag
cgtggtattgttggtttgcctggtcagcgtggtgaaagaggtttcccaggactcccagga
ccctctggtgagcctggcaaacagggagcttctggttcttctggtgaccgtggacctcct
ggccctgttggacctcctggattgactggacctgctggcgagactggacgtgagggtaat
cctggatctgatggtccacctggtagagatggtgctcctggtgtgaagggtgagcgtggc
aacactggcccgattggtgctcccggagctcctggtgcccctggtgctcctggttccgtt
ggtccaattggcaaacagggagacagaggagagaatggcccacaaggacctgctggcccc
cctggaccagctggagctagaggcatggttggaccacaaggacctcgtggtgataagggt
gaggcaggagaagctggagaaagaggtcagaagggacacagaggattcaccggtctgcag
ggtctgccaggacctcctggtgctcctggagaccagggtgctgccggacctgctggacca
agtggcgctaagggacctgcaggacctgttggaccagctggtaaagacggttctaatggt
cagcctggacccattggaccacctggacctcgtggacgctctggagagtctggcccaatt
ggtccacctggtaaccctggacctcctggtcctcctggtccccctggccctggcattgac
atgtctgccttcgctgggttgtctcagcccgagaaaggaccggatcctctgcgttacatg
cgtgctgatgaggcttccagctctcttagacaacatgatgtggaggtggatgccacactg
aagtcaatcaacagccagatcgaggacatccgcagccctgatggctcccgcaagaaccct
gcacgctcctgccgagacctgaaactctgccaccctgaatggaagagcggtgactactgg
gttgatcccaaccttggtagcagcgctgatgccatcaaagtcttctgtaacatggagacc
ggagagacttgtgtgaagcccagcactcccaaaatcccacgcaagaactggtggagcaat
aagggcaaggggcagaagcacgtgtggtttggagagagcatgaacggtggattccacttc
agctatgctgatagcagccagactcctagtactaccagcatccagctgaatttcctgaga
ctgctgtctactgaggccactcagaccatcacctaccactgcaagaacagcgtggcttac
atggaccaagccacaggcaacctgaagaaggccattctgctgcagggctccaatgatgtg
gagatcagagcagagggcaacagccgctttacatatggagtgcttgaggatggctgtcag
aagcacacaggtcagtgggctaagactgtgattgagtacaaaactcagaagacatccagg
ctgcccatcgtggacattgctccaatagacatcggaggagcagatcaggagtttggagtg
gacattggtgcagtctgcttcttgtaa
DBGET
integrated database retrieval system
