Ctenopharyngodon idella (grass carp): 127518060
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Entry
127518060 CDS
T08802
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127518060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127518060
Enzymes [BR:
cide01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
127518060
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
127518060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
FMP23
NCBP3
TM7S3_TM198
RRM_1
Motif
Other DBs
NCBI-GeneID:
127518060
NCBI-ProteinID:
XP_051760344
LinkDB
All DBs
Position
1:3972199..3978590
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AA seq
676 aa
AA seq
DB search
MEVTRQNFKEVLPEVCNAVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKH
SMNFLLFQFGICTFRYDQNQSTYITRAFNFYIFPKPFSRTSPDVKFICQSSSIDFLASQG
FDFNKVFRSGIPYLTREEESQLREQYEERRSQMNGAGPVTYTPPSGTGVCSVPEDQRDFI
RTVEQKVDTLLKSSDQTLDLEPCTGFQRKLIYQTLNSKFPKLHVETLETEKKERFIQISK
VDEEERRRREQQKQQREQEELNDAVGFSRVVRAISKSGKLVVGHNMLLDVMHTIHQFCVT
LPEELDDFKEVAMSVFPRLLDTKLMASTQPFKVCFVCVCVGFCLSVCLMSVCVQEIISNT
SLAELHKQLREKPFKSPTTECPEGLRSYDTSTEQLHEAGYDAFITGLCFISMANHLGSFL
TPPKSHISARSKLLEPFYNKLFLMRVIDIPYLNMSGPDLQPKRDHVLYVTFPKEWKTSDL
YQLFSAFGNIQVSWIDDTSAFVSLSQTEQVQIAMNTSRYAESYRIQTYAEYLQARQKNTC
SSRKWASDGWADTSYSTAAMVTSRLHAVKRSISPSLEEQNHEADSSWTTYSSVKKIKTDG
SCSQTYADVTGSEASCDWPRLQPEGGASASPVQEEAEPEESSANQSQGKRSRKHKKRKSD
ASETTPPTLFDVPRVW
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcacaagacagaattttaaggaggttcttccagaggtgtgtaacgcggtgcag
gaggcggatttcatctcgatagacggagagttcacaggaatcagtgatgggccgtcagtc
agcgctctgaccaatggactggacacaccggaggagagatacaccaaactgaggaagcac
tccatgaacttcctgctcttccagttcggcatctgcaccttcagatacgaccagaaccag
tcgacgtacatcactagagccttcaacttctacatcttccccaagcccttcagccgcacg
tctccagacgtcaagttcatctgtcagagctccagcattgacttcctggccagccagggc
ttcgacttcaacaaggtcttccgcagcgggatcccgtacctgacgcgggaggaggagtct
cagctgagggagcagtatgaggagaggcggagtcagatgaacggggcggggccggtcaca
tacacgccaccctccggaacgggcgtctgcagcgtgcctgaggaccagagagacttcatc
aggaccgtggagcagaaggtggacactctcctgaagagctctgatcagactctggatctg
gagccctgcaccgggtttcagaggaagctcatctatcagacgctcaactcaaagtttcca
aaacttcacgtggagacgctggagacagagaagaaggagcgtttcatccagatcagtaag
gtggatgaagaggagaggaggaggagagagcagcagaaacagcagagagagcaggaagag
ctgaacgacgctgtgggtttctctagggttgttagagccatctccaaatctgggaagctg
gtggtgggtcacaacatgctgctggacgtcatgcacaccatccatcagttctgcgtgacg
ctgcctgaggagctggatgactttaaggaggtggccatgtctgtgtttcccaggctgttg
gacaccaagctgatggcgtccacgcagcccttcaaggtatgtttcgtgtgtgtgtgtgtt
ggtttttgtttaagtgtgtgtttaatgagtgtttgtgtgcaggagatcatcagcaacacg
tcactggctgaactgcacaaacagctgagagaaaaacccttcaaatctcccaccactgag
tgtcctgaaggcctccggagttacgacacatccacagagcagcttcatgaagcaggttac
gacgccttcatcactggactgtgcttcatctccatggcaaaccacctggggtctttcctc
actcctccaaaaagtcacatctctgctcgctccaaactcctcgaacccttctacaacaaa
ttattcctgatgagggtgattgacattccctacctgaacatgagtggacctgacctgcag
cccaagagagatcacgtcctgtacgtcacgttccctaaagagtggaagaccagtgacctg
taccagctcttcagcgcctttggtaacatccaggtgtcgtggatcgatgacacgtcggcg
ttcgtgtctctcagtcagacggagcaggttcagatagccatgaacaccagccgctacgcc
gagagctaccgcatccagacctacgccgagtacctgcaggccaggcagaagaacacctgc
tccagcaggaagtgggcctccgacggctgggcggacacttcctacagcactgctgccatg
gtgaccagccggctgcatgcggtcaagaggagcatcagtccatctctggaggagcagaat
catgaggctgacagcagctggacgacctacagcagcgtcaagaagatcaagactgacgga
agctgctcacaaacatatgctgatgtcactggttctgaggcgtcctgtgattggcccaga
ctgcagcctgagggcggagcctctgcgagcccagtgcaggaggaggcggagcctgaggag
tcctcggccaatcagagtcaaggtaaaaggagccgcaaacacaagaagaggaagtcagac
gcttctgaaacaacaccgccgacgctctttgacgttcctcgggtttggtag
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