Ctenopharyngodon idella (grass carp): 127519058
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Entry
127519058 CDS
T08802
Name
(RefSeq) X-ray repair cross-complementing protein 5
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
127519058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cide03400
]
127519058
DNA repair and recombination proteins [BR:
cide03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
127519058
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_PK_bind
Ku_C
VWA_2
VWA
SusD-like_2
DUF4447
Motif
Other DBs
NCBI-GeneID:
127519058
NCBI-ProteinID:
XP_051762430
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Position
9:2444379..2463651
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AA seq
731 aa
AA seq
DB search
MAPWMSRAAKSALVLCMDVGFSMSNSEPGQEPPFEQAKKVIQKFVQRQVFAENKDEVALV
LFGTDGTKNPLAKDGQYENITVHRHLMMPDFDLLQEIESELQPGGQQADWLDALVVCMDL
LQNETMGKKYERLNIALLTDLNIQTSEDQLDIIIENLKKAGITMQFFLPFPVDEEDRASG
EGDGPGPSAAPPRPGKGLSRQQTQGLEMVKQIMSSLEEEDGLEEVYTFSDALEKLSIFKR
IDRRPMAWPCQLTIGSSLTIRIVGYKAVTEEKVKKSWAVVDAQSHKRDDVKRETVYCLND
DDETEVQKDDTIQGFRYGSDIVPFSKVDEDQMKYKSDGKCFAVLGFTKQELIRRHQFMGS
QVVKVFAPRDDEHATVALSALIHALDGLKMAAIVRYAYDRRSNPQVGAAFPCIKEKYECL
LYVQLPFMEDLRQFTFPMLENNKKFMPSESQLSAVDALIDSMMLVEKDEDGESVDIFKVN
HIPNPQFQRLFQCLHHRGVNPDDPLPSVEPWLKRVLERPQAVSARCQAPLQDVKTKFPLK
VVLKKKEQKTSADVFGSSADEPDVKKVKVDEEIEFNLAEIAQGNITSVGSVNPSRDFCTL
IKQKTISFDQACQQLTHRIEQLLGNRSPEYYTKSIACIQAFRDQSVSSGNAELFNTYMQS
LKRSVPDRNLQEFWDMLIQDALTLISKDEVDVSTVSKQDANQFLAFEQKEEEQAVPAQED
TGDVDDLLDMM
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggcgccatggatgtcgcgagcagcgaagtcagcgttggtgctgtgcatggatgtgggt
ttctccatgagcaactccgagcctggccaggaaccgccctttgaacaagccaaaaaagtc
attcagaagtttgtccagcggcaggtgtttgctgagaataaagatgaggtggctctggtg
ctgtttggtactgatggcactaaaaaccctctggccaaagacgggcagtatgagaacatc
acggttcaccgtcacctcatgatgcctgattttgatctgctccaagagatcgagagcgag
ctccaacctggtggtcagcaagcggactggcttgatgctcttgtggtttgcatggacctt
ctgcagaatgaaaccatggggaagaaatacgagcgtctgaacatcgccctgctgacggat
ctgaacatacagacttcagaagaccagctggacattatcatcgaaaacctgaagaaagct
ggaatcaccatgcagttctttttgccgttccctgtggatgaagaggacagagcgagtggt
gaaggggacggaccggggccgtcagcggctccaccccgtccaggaaaaggcttgagcaga
cagcagacacaaggtctggagatggtcaaacagatcatgagcagcctagaggaggaagac
ggcctggaagaggtctacacgttcagtgatgctctggagaagctgtccatcttcaagcgc
atcgacaggaggccgatggcttggccctgtcagctgaccatcggcagctcactgaccatc
cgcatcgttggatacaaagctgtgacggaggagaaggtaaagaagtcctgggccgtggtg
gatgctcagagtcacaagcgggatgacgtcaagagggaaacggtttactgcctgaacgat
gatgatgaaactgaagtacagaaggatgacactatccaaggtttccgttatggaagcgac
attgttccgttttctaaggtggacgaggaccagatgaaatataagtctgatgggaagtgt
tttgctgtgctgggcttcactaaacaggagctgattcgtcgtcatcagtttatgggaagc
caagttgtcaaagtttttgctcccagagatgatgagcatgcaacagtggctctgtctgct
ctgattcatgcccttgacggtctaaagatggcagcgattgtgcgttatgcttacgatcgc
cgcagcaaccctcaagtgggcgccgcctttccctgcattaaggagaaatatgaatgtctg
ctgtacgtacagctgccgtttatggaggatctccgacagttcactttcccaatgttggaa
aacaacaagaagttcatgccctcagagtctcagctgtcagccgtggatgcgctgatcgac
tccatgatgctggtggaaaaggatgaggatggagagagcgtggacatcttcaaagtcaac
cacataccaaaccctcagttccagagacttttccagtgcttgcatcaccgcggtgtgaat
cctgatgatcccctgccgtccgtcgagccctggctgaagagggtcctagagcgaccccag
gccgtgtccgcccgctgccaggcccctctacaggacgttaagaccaagttccccctgaaa
gtggtgctgaaaaagaaagagcagaagacaagcgcagacgtgttcggcagcagtgctgat
gagccagatgtgaagaaagtcaaagtggatgaagagatagagtttaacctggccgagatt
gctcagggcaacatcacatcggttggcagtgtcaatccatcgagagatttctgcacgctg
atcaaacagaagaccatttctttcgatcaggcgtgccagcagctgacccacaggattgag
cagttgctgggcaacaggagccctgagtactacacgaagagcatcgcctgtatccaggct
ttcagggatcagtctgtatcgagcggaaacgcagagctgttcaacacttacatgcagtcc
ctgaagaggagcgttcctgacaggaatcttcaggaattctgggatatgctcatccaagat
gccctgacgctgataagcaaagatgaagtggacgtaagcaccgtctccaaacaagacgca
aaccagttcctggcgtttgagcagaaggaggaagagcaggcggttccagcgcaggaagac
actggagatgtagatgatctgctggacatgatgtaa
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