Ctenopharyngodon idella (grass carp): 127519122
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Entry
127519122 CDS
T08802
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cide03000
]
127519122
Transcription factors [BR:
cide03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
127519122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
127519122
NCBI-ProteinID:
XP_051762549
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All DBs
Position
9:10900378..10993979
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AA seq
336 aa
AA seq
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MYSMMMETDLHSPGPQTNTNPGQTGPNSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLGGAGGGVGMSPGGVGQRLESPGGHGGSASAGYAHMNGWANGTYSGQVAAAAA
AAAMMQEAQLAYSQHPGSGSHHHHAHHHHPHNPQPMHRYDMTALQYSPISNSQSYMSASP
SGYGGITYTQHQNSSVATSAAIGTLSSLVKSEPNISPPVTTHSRGPCPGDLREMISMYLP
TGESGDPSVQSRLHALPQHYQSTTAGVNGTVPLTHI
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagacggaccttcattcccctggaccccaaaccaacacgaat
ccggggcaaacgggtccaaattcggggagcaaagccaaccaagaccgcgtaaaaagaccc
atgaacgcttttatggtctggtcccggggccagcgccgaaaaatggctcaggagaacccc
aaaatgcacaactctgaaattagcaaaagactcggtgctgagtggaaagtgatgtcagag
gctgaaaagcggccctttattgatgaggcgaagcggttgcgagccatgcacatgaaagag
catccggattacaaatacagaccgaggcgcaaaaccaagaccctgcttaaaaaggacaag
tactcgttggctggcggcttgctcggcggtgcgggtggcggggtcggaatgagtcctgga
ggggtcggccagaggttggagagtcctgggggtcacggaggctcggccagcgctggctac
gcgcacatgaacggctgggcgaacggcacttactccggccaggtggccgccgcggcggca
gcggctgcgatgatgcaggaggctcagctcgcttacagccagcacccaggtagtgggtct
caccatcaccacgctcatcaccatcacccgcacaaccctcagcccatgcaccgctacgat
atgactgctcttcagtacagccccatctcgaactcccagagctacatgagcgcttctccg
tccggctacggtgggataacatacacgcagcatcaaaattccagcgtcgccacttctgcg
gccatcggcacgctgagctcgctcgtcaagtccgaacccaatataagccctccggttacc
acacactcccgaggcccctgccccggagacttgagagagatgataagcatgtatttaccg
accggggaatccggggatccgtctgtgcagagcagactgcatgccttaccgcagcactat
cagagcacaactgccggagtaaacggaactgtcccattgacgcatatttga
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