Entry |
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Name |
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
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KO |
K06823 | collagen type XVIII alpha |
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Organism |
cide Ctenopharyngodon idella (grass carp)
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Brite |
KEGG Orthology (KO) [BR:cide00001]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:cide04147]
127519256
00535 Proteoglycans [BR:cide00535]
127519256
00536 Glycosaminoglycan binding proteins [BR:cide00536]
127519256
Exosome [BR:cide04147]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
127519256
Proteoglycans [BR:cide00535]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
127519256
Glycosaminoglycan binding proteins [BR:cide00536]
Heparan sulfate / Heparin
Extracellular matrix molecules
127519256
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
9:complement(8228195..8318313)
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AA seq |
1644 aa
MSELRFWLCLFIVVCLRICHTHGWFWSDDSNAKGTQTPAYLSTLRPTSRPRTEPPRTAGT
SASVTVVEKEVSYNGGHFEGESEFISRSGLGVESESVNGSWSEFASGSGSGSSQFERQDA
YVTSTNVSGIAGENASLHVGNLKLETKVDQMDGLQSISDPAYSQFNESINVKNVSTYNNS
TEHDEYDNTTLYSSEYSVSDNLLTIESEYFVARMPVVESSRCLPVDPDLPFCTRTRVESF
MVPNFLNQSSVEEVQVVLTQWAWLLRSNCHHSLEWFFCLLLTPRCGPPGLQPPLPCRSFC
EVLRDSCWTLLDEGRLPVECHSLPEEKHDGYQCLSVSNQKEESGVSLLQLIGDPPPDGVT
KIFEHDNSPSYMFSPKANVGQSAAAHLPSPFYRDFSLIFNIKPTSTKPGVIFSITDPTHN
IMYVGVKLSAVENGKQHIIFYYTEPDSQSSYEAARFVVPSMTMTWTRFSISVLNEQVSLY
FNCDSDPQVINFERSPDDMDLNAGDGVFVGHASGADPDKFVGVIGDLRVVRDPGAAERHC
EEEEDDFDANLQGSGDFGASGDGDRPPSVQPTPPSSRPIQQPPVTSRTIEKQLTGSIGAR
GEKGDRGEKGDRGLTGPKGDSGSGSVSGGAAKGEKGDAGEKGIKGSSGFGYPGSKGDRGP
AGPPGPPGPPGPSADVEMRGDGSVVQKVAGPRGPPGPPGPPGVDGEPGDPGEDGKAGQVG
PPGFPGTPGLKGEKGDRGESQPGPRGPAGPPGPPGPPSRSDRPTFVDMEGSGFDMDSVRA
MPGLPGPPGPPGPPGPPGLASSVSGGFGPPGPPGQNGAPGQPGLPGPPGADGKPGSPGPR
GEKGDAGELGLPGPVGEKGATGSPGSPGLPGQGGLAGLPGPMGPVGPPGPPGPPGPSFAG
FDDMEGSGIHFSSVPGIRGPVGIQGPPGIPGPQGKPGFPGFPGEKGSEGPQGQDGRPGLD
GFPGPQGPKGDRGDRGERGEPGRDGTSVPGPPGPPGPPGQIIYRYSEIDDETGGAGPQGG
PGLPGQAGFPGPMGPKGDRGEPGSPGHAIKGEKGEPGLILGPDGNPHYLGELVGQKGERG
IPGPVGPLGPAGPPGLKGEFGMPGRPGRPGVNGYKGEKGDPGSGSGYGYPGPPGPPGPPG
PPGPAVPLDRFGRYEDYSRQYTATKGEKGDQGAPGIPGSPGLSSNFDIYALKNEMKGERG
ESGLKGEKGEPGGGFYDPRFGAVQGPPGNPGLPGPKGDSIRGPPGPQGPPGPPGVGYDGR
PGNPGPPGPPGPPGSPSLPGANRPSLSIPGPPGPPGPPGIPGTGSGQVTVLRSYDIMIAT
ARRQTEGALIYVLDRNDLYLRVRDGVRQVMLGDYKPFYGVLDNEVAAVQPPPVVHYSQDH
TANNGAEQISPPHQPIEFPRSEPENRNPNPPDSRYPDPRYPPYTDSRYNPVQPEIRYPVQ
PERNPITPARRPSPPVNQPEGHTHTSGPGLHLIALNSPQVGNMRGIRGADFLCFQQARAV
GLKGTFRAFLSSKLQDLYSIVRKSDRETLPIVNLKDQVVFRSWESLFSDSESRMKDNAPI
YSFDGRDVLRDSAWPEKMIWHGSSGRGHRQTDNYCETWRAGDRAVTGLASSLQAGQLLQQ
TSSSCSSSYIVLCIENSYMAQSKK |
NT seq |
4935 nt +upstreamnt +downstreamnt
atgtctgagctcaggttttggctgtgcctctttattgtggtgtgcttgaggatatgccac
acacatggctggttctggtctgatgactcaaatgcaaagggcacgcagacaccggcctac
ctgtctaccctaaggcccacatcacgaccgaggacagagccgcccagaacagcaggtaca
agtgcttctgtaactgtggtggaaaaagaggtcagttacaatggaggtcattttgagggg
gaatcagagttcatatccaggtccgggttgggggttgagtctgaatctgtaaatgggtca
tggtctgaatttgcttctggatccggatctggatcttctcaatttgaaagacaggatgcc
tatgttacgtcaaccaacgtttctggtattgctggtgaaaatgctagtttgcatgtggga
aacctcaaactggagaccaaagtggaccagatggatggacttcagagcatcagtgaccca
gcatacagtcaatttaatgaaagcattaatgtcaaaaatgttagcacttataataattct
actgagcatgatgagtatgataacacgacgttgtattcctctgaatactctgtctccgat
aatctactaaccattgaaagtgagtattttgtagctcgcatgccggtcgttgaatcctct
cgctgcttgccagttgatcctgatttgccattttgcaccagaactagagtggagagtttc
atggtgcccaattttctaaatcaaagcagcgtggaggaagttcaggtggttttaacccag
tgggcatggcttttgcggtcaaactgccatcatagtttggaatggtttttctgcctgctg
ttgacaccacggtgcggcccgcctggactgcagcccccgctgccctgtcgcagtttctgc
gaggtcctgcgtgacagttgctggacactcctggatgagggccgcctccccgtggagtgt
cactctctgcctgaagaaaagcatgatgggtatcagtgcttgtcagttagtaaccagaaa
gaagaaagtggagtgtcgctgttgcagttaattggcgatcctccacctgatggcgtcacc
aaaatctttgaacatgacaacagccctagctatatgtttagcccaaaagccaatgttgga
cagtcagctgcggcccacctgcccagccctttctaccgtgatttctccctcattttcaac
ataaaacccacgtccaccaagcctggcgtcatattctccatcactgacccaacccataac
atcatgtatgttggtgtgaagctgtcggcagtggaaaacggcaagcagcatattatcttc
tactacaccgagcctgactcgcagagttcatatgaggcggccagattcgtcgtgccctcg
atgaccatgacctggacccggttttccatcagtgttttgaatgagcaggtttccctctac
ttcaactgtgactcagatcctcaggtcatcaattttgagcggtccccagatgatatggac
ctgaatgccggggatggagtatttgttggccatgctagtggagcagatccagataagttt
gtgggtgttatcggtgatctgagggtggtgagagaccctggggcggctgaacggcactgt
gaagaagaggaggatgactttgatgcgaatctgcagggatcaggtgattttggagcaagt
ggagatggagaccgaccaccatcagtccagccgacacctccctcctctcggccgatccag
cagccaccagtgaccagcagaacaattgagaagcagctgacaggttctattggtgcaaga
ggagagaaaggagacagaggagagaagggtgacaggggccttacagggccaaagggcgat
tcaggatctggatctgtgtctggtggtgctgcaaaaggagagaagggtgacgcaggagag
aaaggaataaagggcagttcaggttttggttatcctggatcaaagggtgatcgtggtccc
gctgggcctccaggacctcccggtccccccgggcccagtgcagatgtagagatgagagga
gatgggtcagttgttcaaaaggtggcaggaccaagaggaccaccaggaccccctggtcct
cctggagttgatggggagccgggtgaccctggtgaagatggaaaagctggccaagttgga
ccacccggatttcctgggactcctggactcaaaggagagaaaggagaccgaggtgaaagt
cagccaggaccccgtgggcctgcagggcctcctggcccaccaggacccccctctcgctct
gacaggcctacatttgtggacatggagggctctggatttgatatggacagtgtgcgggca
atgcccggtttgcccggcccacctggtcctcctggtccccccggtccccctggccttgca
tcttcagtctctggtggttttgggcctcctggtcctcctgggcaaaatggagctccaggt
caaccgggacttccaggtccaccaggtgctgatggaaaaccaggctcacctggcccaaga
ggagagaagggcgatgccggtgagctgggcctacctggacctgtgggagagaagggtgcc
acaggttctcctggttcccctggcctccctggacagggtgggcttgctggtcttccagga
ccaatgggacccgtcggaccaccagggccacctggtcctcctggcccaagctttgctggt
tttgatgatatggagggttctggtattcacttcagttcagtccctggaataagaggacca
gtaggaatccagggacctcctggtatcccaggaccacaaggtaagcctggtttcccagga
tttcctggtgagaaaggcagtgaaggacctcagggacaagatggccgccctggtttggat
ggcttccctggaccacagggaccaaagggtgacaggggagaccgaggcgagaggggtgaa
cctggacgagatggaactagtgttccaggtccacccggcccccctggaccacctggacaa
attatttatcgttattctgaaattgatgatgaaactggaggagcagggcctcagggtggg
cctggtcttcctggtcaagcgggattccctgggccaatgggaccaaagggtgacagagga
gaacctggttcaccaggccatgccattaagggagaaaaaggagaacctggacttattctt
ggacctgatggaaacccacattaccttggtgaattggtaggccaaaagggtgagagagga
attcctggaccagttggacctcttggtccagctggacctcctggtttgaaaggtgaattt
ggaatgccaggcagacccggccgcccaggtgtgaacggatacaaaggagaaaagggagac
ccagggtcaggctctggatatggttacccaggtccccccggtcccccaggaccccctggt
ccccccggacctgctgtgcccttggacagatttggaagatatgaagattattcaaggcaa
tatacagcaacgaaaggagagaaaggagaccagggagctcctggcattcccggatcgcca
ggtttatcctcaaactttgatatctatgccctcaagaatgagatgaagggggagcgcggt
gagtccggtcttaaaggagagaaaggagagccaggaggtggattttatgaccctcgtttt
ggagcggtacagggaccaccaggaaacccaggacttcctggacctaaaggagactcaatc
agaggtccccctggaccgcagggcccaccaggaccacccggggttggttatgatggtcgt
ccaggaaacccagggcctcctggaccccctggccctccagggtcaccatcattgccagga
gccaacagaccatcactcagtattcccggacctccaggtccccctggcccacctggaatt
cccggcactggatctgggcaggtgactgtcctgaggtcttatgacatcatgattgctacg
gcacgcagacagacagaaggtgctctgatttatgttttggacagaaacgatctctacctc
agagttcgggatggtgtcagacaagtgatgcttggagattataaacccttctatggagtc
ctggacaatgaggtggcagcggtccagccgccccctgttgttcactattcccaggaccac
acagctaacaatggagcagagcagatttctccaccgcaccagccgattgagtttccaagg
agtgagccagagaatagaaaccccaatccgcctgactcccgttacccagatccacgatac
ccaccctacactgatagcaggtacaatcctgtacaaccagaaatcagataccctgttcaa
cctgagaggaaccctatcactccagcccgccgtcccagcccccctgtcaatcaaccagaa
ggccacacccatacttccggaccagggttgcatcttattgccctgaattctccacaagtg
gggaacatgagaggcattcgtggggcagacttcctgtgcttccagcaggctagggccgtg
ggtttgaagggaacattcagagccttcctgtcttccaaacttcaggatctctacagtatc
gtccgcaaatccgacagagagacattaccgattgttaacctcaaggatcaagtcgttttc
agaagctgggagtctctcttcagtgactcagagagcaggatgaaggacaatgctcctatc
tactcctttgatggcagagatgtcctgagggacagtgcctggccagagaagatgatctgg
cacgggtccagtggcaggggtcacaggcagacggataactactgtgagacatggagagcc
ggagaccgcgcagtgacaggcttagcctcatctctgcaggctggccaactcctccagcag
acctccagcagctgctccagttcctacatcgtgctgtgcatcgagaacagctatatggca
caatccaagaaataa |