KEGG   Ctenopharyngodon idella (grass carp): 127519256
Entry
127519256         CDS       T08802                                 
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
  KO
K06823  collagen type XVIII alpha
Organism
cide  Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:cide00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cide04147]
    127519256
   00535 Proteoglycans [BR:cide00535]
    127519256
   00536 Glycosaminoglycan binding proteins [BR:cide00536]
    127519256
Exosome [BR:cide04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   127519256
Proteoglycans [BR:cide00535]
 Extracellular matrix (ECM) proteoglycans
  Basement membrane proteoglycans
   127519256
Glycosaminoglycan binding proteins [BR:cide00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   127519256
SSDB
Motif
Pfam: Endostatin Collagen Fz Collagen_trimer DUF1554
Other DBs
NCBI-GeneID: 127519256
NCBI-ProteinID: XP_051762797
LinkDB
Position
9:complement(8228195..8318313)
AA seq 1644 aa
MSELRFWLCLFIVVCLRICHTHGWFWSDDSNAKGTQTPAYLSTLRPTSRPRTEPPRTAGT
SASVTVVEKEVSYNGGHFEGESEFISRSGLGVESESVNGSWSEFASGSGSGSSQFERQDA
YVTSTNVSGIAGENASLHVGNLKLETKVDQMDGLQSISDPAYSQFNESINVKNVSTYNNS
TEHDEYDNTTLYSSEYSVSDNLLTIESEYFVARMPVVESSRCLPVDPDLPFCTRTRVESF
MVPNFLNQSSVEEVQVVLTQWAWLLRSNCHHSLEWFFCLLLTPRCGPPGLQPPLPCRSFC
EVLRDSCWTLLDEGRLPVECHSLPEEKHDGYQCLSVSNQKEESGVSLLQLIGDPPPDGVT
KIFEHDNSPSYMFSPKANVGQSAAAHLPSPFYRDFSLIFNIKPTSTKPGVIFSITDPTHN
IMYVGVKLSAVENGKQHIIFYYTEPDSQSSYEAARFVVPSMTMTWTRFSISVLNEQVSLY
FNCDSDPQVINFERSPDDMDLNAGDGVFVGHASGADPDKFVGVIGDLRVVRDPGAAERHC
EEEEDDFDANLQGSGDFGASGDGDRPPSVQPTPPSSRPIQQPPVTSRTIEKQLTGSIGAR
GEKGDRGEKGDRGLTGPKGDSGSGSVSGGAAKGEKGDAGEKGIKGSSGFGYPGSKGDRGP
AGPPGPPGPPGPSADVEMRGDGSVVQKVAGPRGPPGPPGPPGVDGEPGDPGEDGKAGQVG
PPGFPGTPGLKGEKGDRGESQPGPRGPAGPPGPPGPPSRSDRPTFVDMEGSGFDMDSVRA
MPGLPGPPGPPGPPGPPGLASSVSGGFGPPGPPGQNGAPGQPGLPGPPGADGKPGSPGPR
GEKGDAGELGLPGPVGEKGATGSPGSPGLPGQGGLAGLPGPMGPVGPPGPPGPPGPSFAG
FDDMEGSGIHFSSVPGIRGPVGIQGPPGIPGPQGKPGFPGFPGEKGSEGPQGQDGRPGLD
GFPGPQGPKGDRGDRGERGEPGRDGTSVPGPPGPPGPPGQIIYRYSEIDDETGGAGPQGG
PGLPGQAGFPGPMGPKGDRGEPGSPGHAIKGEKGEPGLILGPDGNPHYLGELVGQKGERG
IPGPVGPLGPAGPPGLKGEFGMPGRPGRPGVNGYKGEKGDPGSGSGYGYPGPPGPPGPPG
PPGPAVPLDRFGRYEDYSRQYTATKGEKGDQGAPGIPGSPGLSSNFDIYALKNEMKGERG
ESGLKGEKGEPGGGFYDPRFGAVQGPPGNPGLPGPKGDSIRGPPGPQGPPGPPGVGYDGR
PGNPGPPGPPGPPGSPSLPGANRPSLSIPGPPGPPGPPGIPGTGSGQVTVLRSYDIMIAT
ARRQTEGALIYVLDRNDLYLRVRDGVRQVMLGDYKPFYGVLDNEVAAVQPPPVVHYSQDH
TANNGAEQISPPHQPIEFPRSEPENRNPNPPDSRYPDPRYPPYTDSRYNPVQPEIRYPVQ
PERNPITPARRPSPPVNQPEGHTHTSGPGLHLIALNSPQVGNMRGIRGADFLCFQQARAV
GLKGTFRAFLSSKLQDLYSIVRKSDRETLPIVNLKDQVVFRSWESLFSDSESRMKDNAPI
YSFDGRDVLRDSAWPEKMIWHGSSGRGHRQTDNYCETWRAGDRAVTGLASSLQAGQLLQQ
TSSSCSSSYIVLCIENSYMAQSKK
NT seq 4935 nt   +upstreamnt  +downstreamnt
atgtctgagctcaggttttggctgtgcctctttattgtggtgtgcttgaggatatgccac
acacatggctggttctggtctgatgactcaaatgcaaagggcacgcagacaccggcctac
ctgtctaccctaaggcccacatcacgaccgaggacagagccgcccagaacagcaggtaca
agtgcttctgtaactgtggtggaaaaagaggtcagttacaatggaggtcattttgagggg
gaatcagagttcatatccaggtccgggttgggggttgagtctgaatctgtaaatgggtca
tggtctgaatttgcttctggatccggatctggatcttctcaatttgaaagacaggatgcc
tatgttacgtcaaccaacgtttctggtattgctggtgaaaatgctagtttgcatgtggga
aacctcaaactggagaccaaagtggaccagatggatggacttcagagcatcagtgaccca
gcatacagtcaatttaatgaaagcattaatgtcaaaaatgttagcacttataataattct
actgagcatgatgagtatgataacacgacgttgtattcctctgaatactctgtctccgat
aatctactaaccattgaaagtgagtattttgtagctcgcatgccggtcgttgaatcctct
cgctgcttgccagttgatcctgatttgccattttgcaccagaactagagtggagagtttc
atggtgcccaattttctaaatcaaagcagcgtggaggaagttcaggtggttttaacccag
tgggcatggcttttgcggtcaaactgccatcatagtttggaatggtttttctgcctgctg
ttgacaccacggtgcggcccgcctggactgcagcccccgctgccctgtcgcagtttctgc
gaggtcctgcgtgacagttgctggacactcctggatgagggccgcctccccgtggagtgt
cactctctgcctgaagaaaagcatgatgggtatcagtgcttgtcagttagtaaccagaaa
gaagaaagtggagtgtcgctgttgcagttaattggcgatcctccacctgatggcgtcacc
aaaatctttgaacatgacaacagccctagctatatgtttagcccaaaagccaatgttgga
cagtcagctgcggcccacctgcccagccctttctaccgtgatttctccctcattttcaac
ataaaacccacgtccaccaagcctggcgtcatattctccatcactgacccaacccataac
atcatgtatgttggtgtgaagctgtcggcagtggaaaacggcaagcagcatattatcttc
tactacaccgagcctgactcgcagagttcatatgaggcggccagattcgtcgtgccctcg
atgaccatgacctggacccggttttccatcagtgttttgaatgagcaggtttccctctac
ttcaactgtgactcagatcctcaggtcatcaattttgagcggtccccagatgatatggac
ctgaatgccggggatggagtatttgttggccatgctagtggagcagatccagataagttt
gtgggtgttatcggtgatctgagggtggtgagagaccctggggcggctgaacggcactgt
gaagaagaggaggatgactttgatgcgaatctgcagggatcaggtgattttggagcaagt
ggagatggagaccgaccaccatcagtccagccgacacctccctcctctcggccgatccag
cagccaccagtgaccagcagaacaattgagaagcagctgacaggttctattggtgcaaga
ggagagaaaggagacagaggagagaagggtgacaggggccttacagggccaaagggcgat
tcaggatctggatctgtgtctggtggtgctgcaaaaggagagaagggtgacgcaggagag
aaaggaataaagggcagttcaggttttggttatcctggatcaaagggtgatcgtggtccc
gctgggcctccaggacctcccggtccccccgggcccagtgcagatgtagagatgagagga
gatgggtcagttgttcaaaaggtggcaggaccaagaggaccaccaggaccccctggtcct
cctggagttgatggggagccgggtgaccctggtgaagatggaaaagctggccaagttgga
ccacccggatttcctgggactcctggactcaaaggagagaaaggagaccgaggtgaaagt
cagccaggaccccgtgggcctgcagggcctcctggcccaccaggacccccctctcgctct
gacaggcctacatttgtggacatggagggctctggatttgatatggacagtgtgcgggca
atgcccggtttgcccggcccacctggtcctcctggtccccccggtccccctggccttgca
tcttcagtctctggtggttttgggcctcctggtcctcctgggcaaaatggagctccaggt
caaccgggacttccaggtccaccaggtgctgatggaaaaccaggctcacctggcccaaga
ggagagaagggcgatgccggtgagctgggcctacctggacctgtgggagagaagggtgcc
acaggttctcctggttcccctggcctccctggacagggtgggcttgctggtcttccagga
ccaatgggacccgtcggaccaccagggccacctggtcctcctggcccaagctttgctggt
tttgatgatatggagggttctggtattcacttcagttcagtccctggaataagaggacca
gtaggaatccagggacctcctggtatcccaggaccacaaggtaagcctggtttcccagga
tttcctggtgagaaaggcagtgaaggacctcagggacaagatggccgccctggtttggat
ggcttccctggaccacagggaccaaagggtgacaggggagaccgaggcgagaggggtgaa
cctggacgagatggaactagtgttccaggtccacccggcccccctggaccacctggacaa
attatttatcgttattctgaaattgatgatgaaactggaggagcagggcctcagggtggg
cctggtcttcctggtcaagcgggattccctgggccaatgggaccaaagggtgacagagga
gaacctggttcaccaggccatgccattaagggagaaaaaggagaacctggacttattctt
ggacctgatggaaacccacattaccttggtgaattggtaggccaaaagggtgagagagga
attcctggaccagttggacctcttggtccagctggacctcctggtttgaaaggtgaattt
ggaatgccaggcagacccggccgcccaggtgtgaacggatacaaaggagaaaagggagac
ccagggtcaggctctggatatggttacccaggtccccccggtcccccaggaccccctggt
ccccccggacctgctgtgcccttggacagatttggaagatatgaagattattcaaggcaa
tatacagcaacgaaaggagagaaaggagaccagggagctcctggcattcccggatcgcca
ggtttatcctcaaactttgatatctatgccctcaagaatgagatgaagggggagcgcggt
gagtccggtcttaaaggagagaaaggagagccaggaggtggattttatgaccctcgtttt
ggagcggtacagggaccaccaggaaacccaggacttcctggacctaaaggagactcaatc
agaggtccccctggaccgcagggcccaccaggaccacccggggttggttatgatggtcgt
ccaggaaacccagggcctcctggaccccctggccctccagggtcaccatcattgccagga
gccaacagaccatcactcagtattcccggacctccaggtccccctggcccacctggaatt
cccggcactggatctgggcaggtgactgtcctgaggtcttatgacatcatgattgctacg
gcacgcagacagacagaaggtgctctgatttatgttttggacagaaacgatctctacctc
agagttcgggatggtgtcagacaagtgatgcttggagattataaacccttctatggagtc
ctggacaatgaggtggcagcggtccagccgccccctgttgttcactattcccaggaccac
acagctaacaatggagcagagcagatttctccaccgcaccagccgattgagtttccaagg
agtgagccagagaatagaaaccccaatccgcctgactcccgttacccagatccacgatac
ccaccctacactgatagcaggtacaatcctgtacaaccagaaatcagataccctgttcaa
cctgagaggaaccctatcactccagcccgccgtcccagcccccctgtcaatcaaccagaa
ggccacacccatacttccggaccagggttgcatcttattgccctgaattctccacaagtg
gggaacatgagaggcattcgtggggcagacttcctgtgcttccagcaggctagggccgtg
ggtttgaagggaacattcagagccttcctgtcttccaaacttcaggatctctacagtatc
gtccgcaaatccgacagagagacattaccgattgttaacctcaaggatcaagtcgttttc
agaagctgggagtctctcttcagtgactcagagagcaggatgaaggacaatgctcctatc
tactcctttgatggcagagatgtcctgagggacagtgcctggccagagaagatgatctgg
cacgggtccagtggcaggggtcacaggcagacggataactactgtgagacatggagagcc
ggagaccgcgcagtgacaggcttagcctcatctctgcaggctggccaactcctccagcag
acctccagcagctgctccagttcctacatcgtgctgtgcatcgagaacagctatatggca
caatccaagaaataa

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