Ctenopharyngodon idella (grass carp): 127520546
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Entry
127520546 CDS
T08802
Name
(RefSeq) leucine-rich repeat protein SHOC-2
KO
K19613
leucine-rich repeat protein SHOC2
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
127520546
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_14
LRR_4
LRR_1
LRR_LRWD1
LRR_9
LRR_13
LRR_5
LRR_At5g56370
LRR_NLRC4
Motif
Other DBs
NCBI-GeneID:
127520546
NCBI-ProteinID:
XP_051764734
LinkDB
All DBs
Position
10
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AA seq
561 aa
AA seq
DB search
MSSTLGKDKDSKEREPKAEGKSKTKGKDAKDGKKDTSGASPAVAFTLDSTIKRPNPPPST
RKKSSNAEVIKELNKCREENSMRLDLSKRSIHLLPSSIKELTQLTELYLYSNKLQSLPPE
LGCLSGLVTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPAVVYRVTSLTTLYLRF
NRITTVEKDIKNLSKLTMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCT
QITNLDLQHNELLDLPETIGNLSSINRLGLRYNRLSAIPRSLAKCRELEELNLENNNISV
LPEGLLSSLVNLTSLTLARNCFQSYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVL
SKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDICGLVSLEVLILSNNLLKKLP
HGIGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTYLGL
GENLLQHLPEEIGTLENLEDLYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIV
AGGPSFIIQFLKMQGPYRAMV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtactctgggcaaagataaagactctaaggagagggaacccaaagctgaaggg
aaatccaaaaccaaagggaaagatgccaaagacgggaagaaagacacgagcggcgcttcg
cccgcagtggccttcacgttggacagcacgataaagcggcccaacccgccgcccagcacg
cgcaaaaaatccagcaacgctgaggttatcaaggagttgaacaagtgccgtgaggagaac
tcaatgcgcctggacttgtccaagagatccatccatctcttgccctcttccattaaggag
ttgacacagctgaccgagctctacctgtacagcaacaagctgcaaagtctgccgcccgag
ttgggatgcctgtcgggactggtgacgctggcgctcagcgagaactctctcaccagcctg
cccgactccctggacaacctgaagaagttgcgtatgctcgacctgcggcataacaagctg
cgggagatccccgctgtggtgtaccgcgtcacctccctcaccacgctctacctgcgcttt
aatcggatcaccaccgtggagaaggacatcaagaatctgtccaaactcaccatgctcagc
atccgagagaacaagattaaacagctgcccgcagagatcggtgagctctgtaacttaatt
acgctggatgtagcccacaaccagttggagcaccttcctaaagagatcggcaattgcact
cagatcaccaaccttgacctgcagcacaatgaacttcttgacctacctgagactataggt
aatttgtcgagtataaaccgtctgggtctgagatacaatcgcttatcagcgatccctcga
tctttagcaaagtgccgagagctggaagagctcaaccttgaaaacaacaacatctcagtg
ttaccagaggggcttctgtccagtctggtgaacctgacgagtctgacgctggcacggaac
tgtttccagtcttatccagtgggcggcccatcccagttttccaccatctactcactcaat
atggagcacaaccgtatcaacaagatccccttcggtatcttctcccgagccaaagtgctc
agcaagctcaatatgaaggacaaccagttaacatctcttccgctggattttgggacgtgg
accagtatggtggagctgaatctggcaacaaaccagcttaccaagattccggaggatatc
tgtggacttgtgtctttagaggtcctcatattgtccaacaatcttttgaagaagttgcct
catgggattgggaacttaaggaaactacgagagcttgaccttgaggagaacaaactggag
tccctcccgaatgagattgcctaccttaaggatctgcagaaacttgtgttgaccaataat
cagctgaccactttgccgagaggaatcggtcacctgaccaacctgacatacctgggcttg
ggagagaatctactgcagcacctacctgaggagatcggcacactggagaacctcgaggac
ctgtacctgaacgacaaccctaacctgcacagtctgccgttcgagctggccctgtgcagt
aagctgtccatcatgagcatagagaactgccccctcagccaccttccaccgcagattgtc
gccggaggcccttcgttcatcatccagttcctcaagatgcagggtccctaccgtgccatg
gtctga
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