Ctenopharyngodon idella (grass carp): 127520662
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Entry
127520662 CDS
T08802
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cide03009
]
127520662
Enzymes [BR:
cide01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127520662
Ribosome biogenesis [BR:
cide03009
]
Eukaryotic type
Pre-60S particles
Helicases
127520662
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
SBF_like
Helicase_C_2
YbjM
Cas3-like_C_2
DUF6270
DUF6697
Motif
Other DBs
NCBI-GeneID:
127520662
NCBI-ProteinID:
XP_051765006
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Position
10:complement(47719685..47728592)
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AA seq
593 aa
AA seq
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MENITDGKWESLPVKLHESILQTLTELKFTYMTPVQAACIPLFMSNKDVAAEAVTGSGKT
LAFVIPALEILLKREEKLKKMQVGALIITPTRELALQISEVMGQFLQGFPQFRQILLIGG
SNPIEDVEKFKTQGANIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMG
FEASLNTILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVEASSVQKTPA
RLSNYYLMCRAEEKFNTLVAFLRQHKHEKHLVFFSTCACVEYFGKALEVLIKNVSIHCIH
GKMKHKRNKIFADFRALKSGILVCTDVMARGIDIPEVNWVLQYDPPSSASSFVHRCGRTA
RIGNQGNALVFLLPMEESYVNFLSINQKCPLQLYPPVKDVVDVLPKLKAMALQDRAMFEK
GMKAFVSCVQAYAKHECSLIFRIKDLDFAALAHGFALLRLPKMPELKGKTFPNFKQETID
TDTIRFKDKNREKLRQKRLAEQKEKVKETPLRKNFIKNKAWSKQKIRKDRKKKKTAKRKM
DEESDVDNEDLNELLSDTRLLKKLKRGKISEEDFDKHMSSAGSSHPKRAEKQS
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacattaccgatggaaaatgggagagtttacctgtgaaattacatgaaagcata
ttacagacgcttacagagctgaaatttacatatatgactcctgttcaggctgcctgcatc
cctctttttatgagtaataaagatgtggctgctgaagcggtgactggcagtgggaagact
ctggcatttgtgattcctgcattagaaattctcctaaagcgagaagagaagttaaaaaag
atgcaggtgggtgcattgatcataacgcccacccgtgagctggcactgcagatcagtgag
gtgatgggccagtttctgcaggggtttcctcagtttagacagattctcttaattggtgga
agcaaccctattgaggatgtagagaagtttaagactcagggagccaatatcataatcgcg
acccctggtcgattagaggacatgtttaggaggaaggcagatggacttgatttggccacc
gctgtgaagtctctggacgttctagtcctggatgaggctgaccgtttgctggacatgggc
tttgaagccagtttaaacactattctggggtatttgcccaagcagcggcgcacagggctt
ttctccgccacacagacgcaagagctagagaagctggtgagggcgggtctgcgcaaccct
gtgcgtatcacagtgaaggagaaaggagtggaggcctcgagcgttcagaaaaccccagcc
agactcagcaattattacttaatgtgtcgagcagaggagaagttcaacactttggtggcg
tttctcaggcagcataaacatgagaagcatcttgtgtttttcagcacctgcgcctgtgtg
gagtacttcggtaaagccctggaagtcttgatcaagaacgtcagcatccactgcatccac
gggaagatgaaacataaacgaaacaagatctttgcagatttccgtgcgctgaagagtggg
attctcgtgtgtacagacgtcatggcgagaggcatcgacataccagaagtcaactgggtg
cttcaatatgacccaccaagcagtgcgagttcctttgtgcatcggtgtggacgaacggca
cgcattggaaaccaaggcaatgcacttgtgtttctcctgccaatggaagagtcatatgta
aatttcttgtccattaatcaaaagtgtccccttcagttgtatcctccagtgaaagatgtg
gttgatgttctgcctaaactgaaggcaatggctttacaggacagagcaatgtttgagaaa
ggcatgaaagcttttgtgtcatgtgtgcaggcgtacgccaaacacgagtgtagtttgata
tttcgcattaaagacctggattttgctgctctggcgcatggcttcgctctccttcgtttg
cctaaaatgcctgaactgaaaggaaagaccttcccgaacttcaaacaggagaccatcgac
acagacaccatccggtttaaagataaaaacagggagaaactgagacaaaaaagactggcg
gagcaaaaagagaaagtgaaagagacgccgttgaggaaaaacttcatcaagaacaaagcc
tggtccaagcagaagatcaggaaggatagaaagaaaaagaagaccgccaaaagaaaaatg
gatgaggaatcagatgttgacaacgaagacttaaacgagcttttaagtgacacgcgtctg
ctgaagaaactcaagagaggaaagatcagtgaagaggactttgacaagcacatgagttca
gcaggaagttcacatcccaaaagagcagagaaacagtcctga
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