Ctenopharyngodon idella (grass carp): 127520733
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Entry
127520733 CDS
T08802
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04140
Autophagy - animal
cide04148
Efferocytosis
cide05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127520733
04148 Efferocytosis
127520733
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
127520733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cide04131
]
127520733
Membrane trafficking [BR:
cide04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
127520733
Hops complex
127520733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
TPR_Vps41
Clathrin
Beta-prop_WDR3_1st
zf-C3HC4_2
Beta-prop_WDR36-Utp21_1st
zf-RING_2
zf-rbx1
zf_RING_Vps8_fungal
zf-C3HC4
TPR_GEMI5
zf-C3H2C3
zf-ANAPC11
Beta-prop_EML_2
zf-RING_UBOX
zf-RING_5
zf-RING_Vps41
zf_RING_Vps8
Glyco_transf_10
DLP_helical
Motif
Other DBs
NCBI-GeneID:
127520733
NCBI-ProteinID:
XP_051765197
LinkDB
All DBs
Position
10:complement(38318552..38328355)
Genome browser
AA seq
927 aa
AA seq
DB search
MAAFLQWRRFVFFDKETVKDPSENGKNFQLPMGISACDSGRGHIVLGDMDGQIWFLTRSL
QLSSFQAYKLRVTHLYQLKQHNILVSVGQDEHGINPLVKVWNLDKKDSGSPLCTRIFPAI
PGNKPTEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLSLHEGNCPITGLAFR
QAGKVTHLFVATLEKVQCYTLSVKEYPRIDLDTHGCALRCSALTDPSQDSQFIVAGDDCV
YLYQPDERGPCFAFDGHKLLTQWHRGYLLLLTHNNKSPSKSDYGSRQTSPTEKHILTIYD
LDNKFIAYSAAFDDVIDVLAEWGSFYVLTRDKTMYMLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDNDGLSEIFRHYGDHLYTKGDHDGAIQQYIRTIGKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSNESEVHFDVEIAIKVLRQA
GYHSHAVFLAERHMHHEWYLKIQLEDLKNYQEALRYIGRLPFDQAESNMKRYGKTLMHHV
PESTTILLKRLCTDYHPSKDSTDRDSLDRPVENKANSEEFIPVFANNPRELRAFLEHMIE
VDPFSSEGVYDTLLELRLQDWAHEQDPGKKKVLQEAALSLLRSDNTVFDKALVLCQMHNF
KEGVLYLYEKGKLYQQIMHYHMQNEEYGKVVEACKRYGDNEVCLWEQALGYFARKEENCK
AYISEVLQHIDENNLMPPLLVVQTLAHNSTASLSVIKDYLINKLERETQQIEEDERKIQQ
YREETTHLRAEIQELKTCAKIFQKTKCSMCNSPLELPSVHFLCGHSFHQHCLESFAESEA
ECPTCTPENRKVMDMLRAQDQKRDLHDHFHRQLKCSNDGFSVIADYFGRGVFNKLTLITD
PPGGKSGAGNLEAEFNRDLLINTKRNV
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttcttacagtggagacgatttgtgtttttcgataaagaaacggttaaagat
ccgagcgaaaatgggaaaaatttccaactaccgatgggtatatcagcctgtgattcaggc
cgaggacatattgtgcttggagatatggatggacagatctggtttttgacccgctccctg
cagctatccagctttcaggcttataagctgcgcgtgacacacctgtaccagctgaaacaa
cacaacatccttgtgtcagtgggtcaggatgagcatggcatcaatcctctggtgaaggtg
tggaaccttgataagaaggacagtggcagtcctctgtgtacccggatatttcccgccata
cctggaaacaaacccactgaagtgtcttgtctcagtgtacatgaaaatcttaatttcatg
gctataggttttacagacggcagtgttgtgctgacaaagggtgacatcaccagagacaga
cacagtaaaactctcagccttcatgaaggcaactgtccaatcacaggcctggctttccga
caggctggcaaagtcacgcacctgtttgtcgccactttagaaaaagtgcagtgttacaca
ttgtcagtgaaagagtaccctcgtatagacctggacacgcacggctgcgccctgcgctgc
tcggcgctcacagatccctcgcaggactcccagttcatagtggctggagatgactgcgtg
tatttgtaccagcctgatgagagaggaccctgcttcgcttttgatgggcacaagcttcta
acccagtggcacagaggatatctcctgctgctcacacacaataacaagtcacctagcaaa
tctgattatggtagcagacagacatcccctacagaaaagcacatcctgaccatttacgac
ctggacaacaagttcatcgcttacagtgcggcgtttgatgacgtcattgatgttctggca
gaatgggggtcgttctatgtcctaacgagggataaaacaatgtatatgctgcaagaaaaa
gacacacagaccaagctagagatgctgtttaagaagaacctgtttgtgatggccattaac
ttggctaaaagtcaacacctggacaatgatggtctatctgagatattcagacattatgga
gaccatctctataccaaaggggatcatgatggagccattcaacagtacattcgcaccatt
gggaagctcgaaccctcatacgtaattcgtaagtttttggatgcacagaggatacataac
ctgacggcgtacctacaggccctccacaggcagtccttggccaacgctgaccacactact
ctactgctgaactgttacaccaaactgaaggacagctccaagctggaagagttcataaag
agcaatgaaagtgaggtgcatttcgatgttgaaatcgccatcaaggtgttacgtcaggcc
ggttatcacagtcacgccgtgtttctggcagagagacacatgcaccatgaatggtatctg
aagatccagctggaggatttgaagaattatcaggaggctttgcgctacattggaaggttg
ccatttgatcaggcggagagtaatatgaagcgttatggtaaaacactaatgcaccatgtg
cctgagagcaccaccatcctcttaaagcgtctctgcactgactatcaccccagcaaagac
tcaactgaccgggacagtctggacaggcctgtggaaaacaaggccaattcagaggagttc
atcccagtttttgccaataacccaagagagctgcgagcgttcctggaacacatgattgag
gtggatccgttctcttccgagggagtttatgacactctactagagctcagactacaggac
tgggctcatgagcaggacccagggaagaaaaaggtcctgcaggaggcagcattgtccctt
ctgaggagcgacaacactgtgtttgacaaggccctggtgctctgccagatgcacaacttc
aaggaaggagtgctgtatctgtatgaaaagggcaaactgtaccagcagatcatgcattac
cacatgcagaatgaagagtatgggaaagtcgtggaggcctgtaagcgctatggggacaac
gaggtgtgtttgtgggaacaggcgctaggctattttgcacgtaaagaagaaaactgcaag
gcctacattagtgaagtcctacagcacattgatgaaaacaacctgatgcctcctcttctg
gtggtgcagactctggcccataattccacagcttctctgtcagtcataaaagactacctg
ataaataaactggagagggagacccagcagattgaagaagacgaaaggaagattcaacag
tatagagaagagacgacccatttacgtgctgagatacaggaacttaaaacctgtgcaaag
atcttccagaagaccaagtgcagcatgtgtaacagcccgctagagctgccatctgtgcac
ttcctgtgtggccactccttccaccagcactgtttagagagcttcgctgaaagtgaggcc
gagtgccccacctgcacccctgagaacaggaaggtgatggacatgttacgtgcgcaagat
cagaaacgagatctgcatgaccatttccacagacagttgaaatgctctaatgatggcttc
tcagtcatcgctgattattttggccgtggagtgtttaacaaactcactctgataacggat
cctcccggaggaaagagtggagctgggaatctggaggctgaattcaacagagatctgctc
attaacaccaagaggaatgtttga
DBGET
integrated database retrieval system
