Ctenopharyngodon idella (grass carp): 127521294
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Entry
127521294 CDS
T08802
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127521294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127521294
03041 Spliceosome [BR:
cide03041
]
127521294
03009 Ribosome biogenesis [BR:
cide03009
]
127521294
03016 Transfer RNA biogenesis [BR:
cide03016
]
127521294
Enzymes [BR:
cide01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127521294
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
127521294
Spliceosome [BR:
cide03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127521294
Complex C
U4/U6.U5 tri-SnRNP related factors
127521294
Ribosome biogenesis [BR:
cide03009
]
Eukaryotic type
Pre-60S particles
Helicases
127521294
Transfer RNA biogenesis [BR:
cide03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
127521294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
127521294
NCBI-ProteinID:
XP_051766445
LinkDB
All DBs
Position
10:complement(30210592..30251522)
Genome browser
AA seq
1035 aa
AA seq
DB search
MADAFGDDLFSVFDEEQAGSSKKATPKSAAQAGKTPDKADKPQSDSAAVRKRDAENDGPD
AMVLGKRQKLETVSAEEINLSELMPKVKAEQVETVEGCTHEVVLPANEEYTQLKPRVGKA
AKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDSERGVVWEETIILLPDNVHHVFLSATIPNARQFAEWICHLHKQPCHVVYTDYR
PTPLQHYVFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDVGDTGGNTGGKWDPKGRRGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDDEKKLVEEVFSNA
TDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAM
GINMPARTVLFTSARKYDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAV
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMKK
LEEEYNAIRIPNEESVVTYYKIRQQLAKLGKEIEEFIHKPRYCLPFLQPGRLVRVKKEDL
DFGWGAVVNFQKKANVKAGGGDIDPLFVVEVLVHCSKDSVKNAATEAAKPAGPGEKGEMQ
VVPVILHLITSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGIPLLDPIDDMGIKD
PALKKVIQKVEAFEHRMYTHPLHSDPNLEAVYTLCEKKALIAGDIKAAKRELKRARTVLQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTAEQATA
LLSCFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLDVDEDSYLNQFRPHLM
DVVYTWANGSSFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFATGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcatttggagacgatttgttcagcgtgtttgatgaagaacaggccggttcc
agcaaaaaggctactccaaagtccgctgctcaggcagggaagacgcctgataaagctgat
aaaccgcagagcgattcagcagctgtccgcaaaagagatgcagaaaatgacggtccagat
gcgatggtgcttgggaaaagacaaaagctggaaacagtgtcagctgaggagatcaatctg
tcagagctcatgcctaaagtgaaggcggagcaggtggagacagtggagggctgcactcat
gaggtggttcttcctgccaatgaggaatacactcagctgaaaccacgcgttggaaaagct
gctaaggagtacccattcatactcgaccctttccagcgtgaggccatcctgtgcattgat
aacaaccagtctgtgcttgtgtcggcccacacatcggcaggaaagacagtgtgtgcggaa
tatgccattgctctggcgctcagagaaaagcagcgagtcatcttcaccagtcccatcaag
gctttgagcaatcagaagtacagagagatgtacgaagagttccaggatgtgggtctgatg
accggtgatgtcactattaaccctacagcttcctgtctggtcatgaccaccgagattttg
aggagcatgctgtacagagggtcagaggttatgagggaggtggcatgggtcatctttgat
gagatccattacatgagagactcagagcgtggagtggtttgggaggaaaccatcattcta
ctgccagacaatgtgcaccatgtcttcctgtcagccaccattcccaacgctcgacagttt
gcagagtggatttgtcacctccacaaacagccctgtcacgtggtgtacacagactaccgc
cccactccactgcagcactacgtctttccagcagggggcgatggactccatctggttgtg
gatgagaacggagagttcagagaagacaattttaatacagctatgcaggtcctgagggat
gtgggggacactggaggcaacactgggggcaaatgggaccccaaaggaagaaggggtgga
accaaaggtccatctaacgtcttcaagattgttaagatgatcatggaaaggaacttccag
ccggtgatcatctttagcttcagtaagaaagaatgcgaggcctatgcactccaagtggct
aaactggatttcaacacagacgatgagaaaaaactggtggaagaagtgttcagcaacgcc
acagactgcctctctgatgaagataaaaagctaccacaggtagagcatgttctgccgttg
ctgaagagaggaattggaattcatcatggcggcctcctcccgatcctcaaagagaccatt
gagatcctgttctctgaggggctgctaaaggccttgtttgctacagaaacattcgccatg
gggatcaacatgcctgctcgaactgtgcttttcaccagtgcgcgcaaatatgatggcaaa
gacttccgctggatcacctctggagagtatatccagatgtcaggacgtgctggcagaaga
ggaatggacgagaggggaatagtcattttcatggtggatgagaagatgagccctgcggtg
ggcaaacagttactgaagggttcggcggaccctctgaacagtgcgtttcacctgacctac
aacatggtgctcaatcttctacgtgtggaggagatcaacccagagtacatgctggagaaa
tccttctaccagttccagcactatagagccgtgcctggtgttgtggagaagatgaaaaag
ctggaggaggagtataatgcgatacgaatccccaatgaagagagcgtggtgacctactac
aagatccgtcagcagctggccaagctaggcaaagaaatcgaggaatttattcacaaacct
agatactgcctgcccttcctgcagccaggcaggctggtcagggtgaaaaaggaagatctg
gattttggttggggtgcagttgtcaatttccaaaagaaggcaaatgtcaaggccggaggt
ggtgatattgacccgttgtttgtggtggaagttctggtccactgcagcaaagacagtgtg
aagaacgcagccacagaagcagccaaaccagcaggcccaggggaaaagggtgagatgcag
gttgttcctgtgattcttcatctcatcacctctattagctctgtgcgcctgtatatcccc
aaagacctgcggccctacgacaaccgacaaagcatgctcaaatccatacaggaggtgcag
aaacgtttcccagatggcattccgctgcttgatcccatagacgacatgggtatcaaggat
ccagcactgaagaaggtcattcagaaggtggaggcattcgagcacaggatgtacacgcac
cccctgcacagcgaccccaacctggaggcagtttacactctgtgtgagaagaaagcactg
attgcaggggacattaaagcggcaaagcgtgagctgaagagagctcgtactgtgctgcag
atggacgagctgaagtgcagaaagcgtgtgctgcggcgcctgggattcgccacttcctct
gatgtcatcgagatgaaagggcgtgtggcctgtgagatcagcagtgcagatgagctgctg
ctgacagagatggtgtttaacgggttgttcaacgacctgacagcggagcaggccactgcg
ctcctcagctgcttcgtcttccaggaaaacgctaatgagatgcccaaattgacggagcag
ctggccggaccgctgcgacagatgcaggaatgtgccaagcgaattgctaaggtgtccgca
gaggccaagctggacgtggacgaggactcttacctgaatcagttccgcccacacctgatg
gatgtggtctacacctgggccaacggctcctcattctctcagatatgcaaaatgaccgac
gtgtttgaaggcagtattatccgctgtatgcgcagattggaagagctcttgaggcagatg
tgccaggcggccaaggccattggaaacacggagctggagaataagtttgcaacgggtata
acgaagattaagagggatatcgtgtttgctgccagtctttacctgtga
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