Ctenopharyngodon idella (grass carp): 127521416
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Entry
127521416 CDS
T08802
Name
(RefSeq) transcription factor Sox-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cide03000
]
127521416
Transcription factors [BR:
cide03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
127521416
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
127521416
NCBI-ProteinID:
XP_051766627
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Position
10:complement(20390571..20392622)
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AA seq
315 aa
AA seq
DB search
MYNMMETELKPPAPQPNTGGTGNTNSSGNNQKNSPDRVKRPMNAFMVWSRGQRRKMAQEN
PKMHNSEISKRLGAEWKLLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKD
KYTLPGGLLAPGGNAMGAGVGVGAGLGAGVNQRMDSYAHMNGWTNGGYGMMQEQLGYPQH
PGLNAHNTAQMQPMHRYDMSALQYNSMTNSQTYMNGSPTYSMSYSQQSTPGMTLGSMGSV
VKSESSSSPPVVTSSSHSRAGQCQTGDLRDMISMYLPGAEVQEQSAQSRLHMSQHYQSAP
VPGTTINGTIPLSHM
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtacaacatgatggaaaccgagctgaagcccccggcgcctcagcccaacacggggggc
acggggaacaccaactcatcaggaaacaaccagaaaaacagcccggaccgggtcaagaga
cccatgaacgccttcatggtgtggtcgcggggccagaggagaaaaatggcacaggagaac
cccaaaatgcacaattcggaaataagcaaacgactcggggccgagtggaaacttctgtcc
gagagcgagaagcggccgttcatcgatgaagccaagcgccttcgggctctccacatgaag
gaacacccggattacaaatacagaccccggaggaaaaccaagaccctcatgaagaaggac
aagtacaccctgccgggcgggctcctggcgccgggcggcaacgccatgggcgccggtgtg
ggtgtaggggccggcttgggcgccggggtcaaccagaggatggacagttatgcccatatg
aacggctggaccaacggaggctacggcatgatgcaggagcagctgggttacccgcagcac
ccggggctgaacgcgcacaacacggcgcagatgcagcccatgcaccgctacgacatgagc
gcgctccagtacaactccatgaccaactcgcagacctacatgaacggatcgcccacctac
agcatgtcctattcgcagcaaagtacgccgggaatgacgctgggctccatgggctcggtg
gtcaaatccgagtccagttcgagtccgccagtggtcacgtcgtcctctcactcccgggcc
ggacagtgtcaaacaggggacctgcgggacatgatcagtatgtacctgcccggggcggaa
gtccaggagcagagtgcccagagcagactgcacatgtcccaacattaccagagcgcacct
gtgcctggcacgacgattaacggcacgattcccttatcgcatatgtaa
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