Ctenopharyngodon idella (grass carp): 127522257
Help
Entry
127522257 CDS
T08802
Name
(RefSeq) LOW QUALITY PROTEIN: phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide02010
ABC transporters
cide04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
127522257
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
127522257
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cide02000
]
127522257
Transporters [BR:
cide02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
127522257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
Motif
Other DBs
NCBI-GeneID:
127522257
NCBI-ProteinID:
XP_051767983
LinkDB
All DBs
Position
11:14752973..14787779
Genome browser
AA seq
2335 aa
AA seq
DB search
MAIGTQLYLLLWKNFTYRRRNKVQLIIELLWPLFLFLILIAVRQSHPPYKQSQCHFPNKA
LPSAGTLAWVQGIICNVNNPCFHHPTAGETPGRVSNFDNSILSRLLVDIRTVLTISGNRT
ALSGLQDLSQAIQRLGERPDAWPNIPVGEYLRANESFSSFLRTNTSISSASVDQLLRSRL
NLQVVSLAGGGMRLSDIVCNASLLGRYLTAEKGDSFPELQGALCAVPSDVMQKAEQIFLS
QLDFSKILTRDRLQANAADLRLISRAVSSVTQELASVMDDISSLSSFSELNSEMRLLTPE
NRLALPRESFRAFSRIMCGHPEAGGERIPSFNWYEDQDIKSFLGRNMSEETDLENNNSTT
PFCENLIRSLESNPLSRIVWRGIKPLFIGKLLYTPDTPVTRTVMSEVNKTFQDFQILNDV
QEAWQEVGPRIKTFMESSVEIRLLQDLLRRPEVAVVVNLRLENTSWTASRISRFLSTPDP
DTPRKVGAPPTWLDLYQDLSNTFSTLSELTKCFSSNKIEGLATEGELVERALELLEDRQF
WAGIVFLLPDPSSSSLPPHVKYKIRMDIDDVTRTNKIKDKFWDPGPAAEPFSDLRYVWGG
FIYVQDLVERAVTHLLTGKEPNTGIYVQQMPYPCFVDDVFIRVLNRSLPLFMTLAWIYSV
AMIIKGVVYEKEARLKETMRIMGLSSGMLWLSWFVSSYLPFLFSAGLLIAALKWGDILPY
SDPAVVFFFLTAFATATIMLCFLISTFFSRANLAAACGGLIYFTLYLPYVLCVAWREYLT
STHRILASFLSPVAFGFGCEYFSQYEEQGVGIQWFNLRSSPMEGDRYNFTTSIVMLYVDA
VIYALATWYIEAVFPGQYGVPRPWYFIFQLNYWGGVPLEVGLPIPTAPREEQDDRIEAEP
TNLILGVSIRNLVKIYKKGAKLAVNHLNIKFYEGQITSFLGHNGAGKTTTMSILTGLFPP
TAGTIYVKGMDIRTDMDIIRRTLGVCPQHNVLFDILTVEEHVWFYGRMKGMSMGDVKKEI
NSLLEDVGLQHKRHEQTKNLSGGMQRKLSVAIAFIGGSKVVVLDEPTAGVDPYSRRGIWD
LLLKYREGRTIILSTHYMDEADLLGDRIAIISQGKLCCCGTPLFLKARLGTGYYLTLVKR
EMHRTPSSISTSKLPSAAVSKDSESSLSDDTGLGSEENGFDVAALMALAQQYISDAQLVE
DIGREAVINLPHAASEDGSLALFLNELDKRQSEFGVVSYGLSDTTLEEIFLRVAEETGVD
ADPEELPASPGHQGAPSEDTDTVRKQPIRKEAQETEPLSGDGQGGGAPLIGCFHTCQQLR
ALFTKRLKYTLRSRRGIFAQIVLPAVFVLIALLFSLIVPPFGKYPSLELQPWMYGEQFTF
FSNDAPQDPATQNLLDALLDPPGFGTKCMEPSSDLECLEEAETKFVRPQIPYSMWQLFHK
GNWTVEKPSPDCECSTENIRRMLPDCPEGAGGIPPPQIKQMTGDILQNLTGHNISDYLIK
TYPQILKKSLKTKKWVNEFRYGGFSLGAKSSQAEDEPHHLEESVLAIRRRYNVAENGSLD
QLLHRLPDVLTGLTSQNNVKVWFNNKGWHAMASFVNIMNNGLLRANLPPDVERRRYGITA
YNHPLNLTKEQLTEMALMTTSVDVLVSICVIFAMSFVPASFVLFLIEERVSKSKHLQFVS
GVKPILYWTTNYLWDMLNYTVPATMVVFIFISFQQESYVSEKNLPALVLLLLLYGWSITP
LMYPASFIFSVPSTAYVVLTSINLFIGINGSVATFVLELFVDEHLNEVNRILKKVFLIFP
HFCLGRGLIDMAKNQAMADAFQRLGTKQNLEPLSWDFVGKNLFAMAMEGIVFFIFTVLLQ
YKFFINFSRWSGFVLPPLGTEDEDVARERDRVKNGRTVGDILVLTDLSKVYKAGRKPAVN
RLCLGIPRGECFGLLGVNGAGKTSTFRMLTGDTHITYGEAFLSNHSVLTEMEKVHQLMGY
CPQFDAISDLLTGREHLEFYARLRGVPEAHVAKVAQWGVQKLGLSQYAEREAGGYSGGNK
RKLSTAISLIGAAPVIFLDEPTTGMDPKAKRFLWNCILSVIKQGRSVVLTSHSMEECEAL
CTRMAIMVNGRFQCLGSVQHLKNRFGDGYTIILRLSTPSTEPCPVETYIQNSFPGIQLKE
RHQNVLHYQLPSQTCSLARVFEVLSNNYKELGIADYSVSQTTLDQVFVNFAKEQSDDDQL
REVTVNGGSVANRLQRPTDLKLEKFSRSSTPHSLSTPSTDQAARSEQTPEPSSTSLKTKK
SKSNSPSVSRQQQQIRMEPVGEAANGSHPPEDQTLGRKDPSMLFIVSTKTQESKV
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccattggaacacagctctatctgctgctgtggaaaaacttcacgtaccgcaggaga
aacaaggtccaactgattattgaacttctgtggccgctcttcctcttcctcatcctcatt
gctgtccggcaatcacacccgccgtataaacagagccagtgtcactttcccaacaaggcc
cttccttcagcaggcacactggcatgggttcagggtatcatctgcaatgtcaacaatccc
tgttttcatcaccccactgcaggagaaacacccggacgagtgagcaacttcgacaactcc
attctctctcgacttttggtcgatatcaggactgtcctgacaatcagtggtaaccggaca
gccctctccggcctacaggacctgtcgcaggcaatccagagactgggggaaagacctgat
gcctggccaaatattccggttggagagtatctcagagccaatgaaagcttctcctccttc
ctgcggacaaacaccagcatctcctcagcatctgttgatcagttactgaggtcacgactg
aacctacaagtggtttcattagcaggtggaggaatgcgtttgtctgatatcgtctgtaat
gcttcactcttgggtcgttacctcaccgctgagaaaggagattctttccctgaactccag
ggggcgctgtgtgctgtgccctcagatgttatgcagaaggcagagcagatcttcctctca
cagctggacttcagcaagatcctcacgagagacagactgcaggcaaacgcggctgatctc
cggcttatcagtcgggctgtttcctctgtaactcaggaactagcatcagttatggatgat
atctcttctctgtctagtttctcagagctgaactccgagatgaggttactgacacctgaa
aaccgcttagcactgccacgcgagagctttcgtgccttctccagaatcatgtgtggacac
ccagaggcagggggagagagaatcccttcattcaactggtatgaagatcaggacatcaaa
tctttcctgggcagaaacatgtcagaggagacagaccttgaaaataacaacagcaccacg
ccgttctgtgaaaacttgattcgaagtctggagtccaaccctctctctcggattgtgtgg
cgaggcatcaaaccactgttcattggaaagctgctatacacaccagacacaccagtcacc
cgtacagtcatgtcagaggtaaacaaaacatttcaggacttccagattctcaatgatgtg
caggaggcgtggcaggaagtgggtcccagaatcaaaaccttcatggagagcagtgtagaa
attcggcttctgcaggatcttctgagaaggcctgaggtggcggtagttgtgaacctacgt
ctggaaaacacctcttggacggcctctcgcatttcccggttcctctcaacccctgaccca
gatacacctcgtaaggttggagcaccgcccacttggttagatctgtaccaggatttaagc
aacaccttcagtactctgtcagaactcacaaagtgcttctcttcgaataaaattgagggt
ctggccacagagggtgagctggtcgaacgagccctggagctgctggaagatcgtcagttt
tgggctggaattgtcttcctcctcccagacccttcatcatcctccctacctcctcatgtc
aagtacaagatccgcatggacatagacgatgtaacccgcacaaacaagatcaaagacaaa
ttttgggatccaggcccggctgctgaaccgttcagtgacctccgctatgtctggggcggt
tttatttatgtgcaggatttagttgagagagctgtgacacatttgctcactggtaaagag
ccaaacacaggcatatatgtgcaacagatgccttacccctgcttcgttgatgatgtgttc
atccgtgtcctgaatcgctcgttgcctctgtttatgacattggcgtggatctattctgtg
gctatgatcataaagggtgtggtctacgagaaagaagctcgtctaaaggagacaatgcgt
atcatgggcctgagctctgggatgctgtggctcagctggttcgtcagtagttacctgccc
ttcctgttcagcgctggactccttatcgccgcccttaagtggggagatatcttaccctac
agtgacccggctgttgttttcttcttccttaccgcatttgctacagccaccatcatgctt
tgcttcctcatcagcacgttcttctcacgcgctaacctggcagcagcgtgtggaggcctc
atttacttcaccctttacctgccgtatgtgctgtgtgtggcctggagggaatatctgacc
agcacacacagaatcttagcgagcttcctgtctccagtggcctttggttttggctgtgag
tatttctctcagtatgaagagcagggtgtggggatccagtggtttaacttgagatccagc
cccatggagggggaccgctacaacttcaccacctccattgtgatgctgtatgtagatgct
gtcatttatgcactggctacttggtacattgaagctgtttttccagggcagtatggggtc
cccagaccatggtattttatcttccagctgaattactggggcggggttccattagaggtg
gggttgcccattcctacagcacctagagaggaacaagatgatcggattgaagctgaaccg
acaaacctcattctgggagtttccataaggaacttagtaaagatttataaaaaaggggcc
aagcttgctgtcaatcaccttaacataaagttctatgagggccaaataacctcttttctg
ggacacaatggagctggcaagacaaccaccatgtccattctaacaggactgtttcctccc
actgctggtacaatatacgtgaagggaatggacattcgcacagatatggacataatccgc
aggactctgggagtttgtccccagcacaacgtcctctttgacatcctgacggtggaagag
catgtgtggttctatggtcgaatgaagggcatgagcatgggggatgtgaagaaagagata
aattcacttctggaggatgtgggcttacaacacaaacgacacgagcagactaaaaacctt
tcaggtggcatgcaaaggaaactgtctgttgcaatcgctttcataggtgggtctaaggtt
gtggtcttggatgagcccacagctggtgtggatccctactcccgccgcgggatttgggac
cttctgctcaaataccgtgaaggccgcaccatcattctgtccacacattacatggacgag
gctgatcttctcggtgaccgcattgcaatcatttcccagggaaagctgtgctgctgtgga
acgccgcttttcctcaaagcacgtcttggtacaggatactaccttacgctggtcaagaga
gagatgcataggacacccagcagcatcagcactagcaaactcccttcagcagcagtaagc
aaggacagcgaatcctcattaagtgatgacacaggattgggcagtgaagagaatggattt
gatgttgctgccctaatggctcttgcacagcagtacatctctgatgctcagctggtggag
gacattggcagagaggcagttatcaacttgccccatgctgcctcagaggacggcagtctt
gccctcttcctgaacgaactggacaaacggcagagcgagtttggcgtggtcagttacggg
ttgtcagacaccacgttagaagagatctttcttcgtgtggcagaggagacaggtgtggat
gcagaccccgaggagctgccagcatctccaggccaccagggggcgccatctgaggacaca
gacacagtacggaaacagccaatcaggaaagaggcccaggagacagaaccgttgagtggg
gatggtcagggtggcggtgcccctctcataggctgcttccatacatgtcagcagcttcga
gcgcttttcaccaaaagactgaagtacactcttcgcagtcgcagaggcatttttgcacag
attgttcttcctgcagtttttgtccttatcgctctactcttcagtctcattgtcccaccc
tttgggaaatatccatccctggagctccagccgtggatgtacggggaacagttcaccttc
ttcagcaatgatgccccacaggacccagccacacagaacctcctggatgccctgctagat
ccacccgggtttggtactaaatgtatggagccgagcagtgacctggagtgtttagaggaa
gctgaaacaaagtttgttcggccccagattccttacagcatgtggcagctctttcataaa
ggcaactggactgtggaaaagccatctcctgattgtgaatgcagtactgaaaatatccgc
agaatgctgccggactgcccagagggagcaggaggaatcccccctcctcagataaaacaa
atgacaggtgatatcctgcaaaatttgacaggtcacaacatttctgactacctcatcaaa
acatatccccaaattctgaagaaaagtttgaagacgaaaaaatgggtaaatgaatttaga
tatggaggtttctctctgggggctaaaagctctcaagctgaggatgaaccacatcacctg
gaggagtctgttttggctattagaagacgctacaacgttgcagagaatggctctttagat
cagctccttcatagactaccagatgtccttacaggactcaccagccaaaacaacgtgaag
gtctggtttaataataaaggatggcatgccatggcatcatttgtgaatattatgaacaat
ggtctccttcgtgccaacttgccgcctgacgtggaaagacgcagatatggaataacagcc
tacaatcacccgctcaacctcacgaaggagcagctgacggagatggccctgatgaccact
tcagtggacgttctggtgtccatatgtgttattttcgccatgtcatttgttcctgccagt
tttgtgctcttccttattgaggaacgggtcagtaaatcaaaacatctgcagtttgtcagt
ggagtgaaacccatcctgtactggactaccaattacttatgggacatgttgaactataca
gtaccagccactatggtggtcttcatcttcatcagcttccagcaggaatcatatgtgtct
gagaagaatctacctgcactggtgctcctactgttgctgtatggttggtctatcactcca
ctcatgtacccagcctccttcatcttctcagtccccagcactgcctatgtggtccttacc
tccatcaacctcttcattggcatcaatggcagtgtcgccaccttcgtcctggagctattt
gtcgatgagcatttgaatgaggtcaacaggatcttgaagaaggtctttctgatcttccct
cacttctgtctgggtcgaggtctcattgacatggccaagaaccaggccatggcagacgca
tttcagcggctgggaaccaaacagaatctggagcctttatcctgggattttgtcgggaaa
aacctgtttgccatggcgatggaaggaattgtgttcttcatcttcactgttctcctgcag
tataaattctttattaattttagtcgatggtcgggctttgtgctgcccccgctgggcacg
gaggatgaggatgtggcaagagagagagaccgtgtgaagaacggtagaactgtgggagat
attctcgtccttacagacctcagtaaggtatacaaggcaggcaggaagccagcggtgaat
cgactttgcttgggcattccacggggagagtgttttggacttcttggtgttaacggcgct
gggaaaacctcaaccttccgcatgctaacaggagacacccatattacttatggggaagca
tttcttagcaaccacagtgttcttacagaaatggagaaagttcatcagctgatgggctac
tgtcctcagtttgatgccatcagtgacctgctgacaggacgtgagcacctggagttctac
gctcgcctcagaggagttccagaagctcatgttgcaaaggtggcgcagtggggagttcaa
aagcttggtctgagtcagtatgctgagcgagaggctgggggatacagtggaggaaataag
cgcaaactctccaccgccatttcccttattggagctgcacctgtcatattcttggatgag
cctacgactgggatggacccaaaggccaagcgcttcctctggaactgcattctcagcgta
atcaaacagggacgatctgttgttctcacctctcacagcatggaagagtgtgaggctcta
tgcacccgaatggccatcatggtgaacggcaggttccagtgtctgggctcagtccagcac
ctgaagaacaggtttggagacggttacacaataatccttcgtttgtccaccccgtctaca
gaaccatgcccggtggaaacctacatccagaactccttccctgggatccagctgaaggag
agacatcagaatgttctccattaccagctgccatcacaaacctgttcgctcgctcgtgtc
tttgaggttctgtcaaataattataaggagctggggatagctgactactcagtgtcacag
actacactggatcaggtgtttgttaacttcgcaaaggagcagtcagatgatgatcagctc
agggaagtcacagtaaacggtggatccgtggccaacagacttcagcggcccacggacctc
aaactcgagaaattcagcaggtcttccacaccacactctctttcaacaccctctacagat
caagctgctcgctcagaacaaacccctgagccttcatctactagtttaaagaccaaaaag
agtaaatcgaacagtccgtcagtctcaagacagcaacagcagatccggatggaacctgtt
ggcgaggcagctaacggatcacaccctcctgaagaccagactcttgggagaaaagatcca
tccatgttatttattgtcagtaccaaaacacaggaaagcaaagtgtga
DBGET
integrated database retrieval system
