Ctenopharyngodon idella (grass carp): 127522370
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Entry
127522370 CDS
T08802
Name
(RefSeq) RNA-binding protein 39a isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
cide
Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cide03041
]
127522370
Spliceosome [BR:
cide03041
]
Common components
Common spliceosomal components
General mRNP proteins
127522370
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_5
RRM_occluded
PRP38_assoc
RSRP
RBD_DEAH11
RRM_7
Motif
Other DBs
NCBI-GeneID:
127522370
NCBI-ProteinID:
XP_051768183
LinkDB
All DBs
Position
11:19991049..19996941
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AA seq
523 aa
AA seq
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MADDLDIEAMLEAPYKKDDNKSISTNGHEERSKKKKKSKSRSKSRERKRSRSRDRKKSHD
HRRSRSRERKRSRSRERRRSRSRSRERGGRYRAPFSGLKFNGGPRGKTGPPPVIKLSRRR
SRSRSPFKKDKSPIRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRI
ISDRNSRRSKGIAYIEFVDATSVPLAIGLSGQRLLGVPIIVQASQAEKNRAAALANNLQK
GSSGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFADAECA
KKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDNDELERTGIDLGTTGRLQLMARLA
EGTGLQIPPAAQQALQMSGSMVAMAAATAAMNPGLSFNINVPTNQALNLPSQPIATHCFQ
LSNMFNPNSENDPGWEIEIQDDVIEECNKHGGVIHIYVDKKSAEGNVYVKCPTIPAAMAA
VSALHGRWFGGKMITAAYVPLPTYHNLFPESVQATQLLMPSRR
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgatttggacatcgaagcaatgctcgaggctccatataaaaaggatgacaac
aagtccataagtaccaatggccacgaggagcggagcaagaagaaaaagaagagcaagagt
cgcagcaagagtcgggagaggaagagaagcaggagtcgcgatcgcaagaagagtcacgac
cacaggaggagccgcagcagagagcggaagcgcagccgcagcagggagagacgccgcagc
cgttccaggagcagggagcgtggcggtcgctacagagctccattttctggcctgaaattt
aacggtggtcccagggggaagactggcccaccacctgtcatcaaactaagccgtagaagg
tctagaagccgcagtcctttcaagaaagacaaaagccctataagacagcctattgataat
ctcacccctgaggaaagggatgcacgcacagtgttctgcatgcagctggcagctagaatc
cgaccacgagacctggaggaattcttttctgcagtgggaaaagtgcgagatgtgcgaatc
atctctgacagaaactccagaagatccaaaggaattgcttacattgagtttgtagatgcc
acctctgtacctttggcaataggcctatccggtcaaagacttctcggagtaccaatcatt
gtccaggcttcacaggctgagaagaacagagcagctgcattggcaaacaacttacagaag
ggcagttcaggacctatgagactgtatgttggctcattacatttcaacatcacagaagac
atgctcagaggcatctttgaaccatttggaaggattgatagtattcaactgatgatggac
agtgaaaccggacgatctaaaggatatggctttatcacgtttgctgatgccgaatgtgct
aagaaggctctggaacagcttaatggctttgagttggctggcagaccaatgaaagtggga
catgtgacggaacgcactgatgcctccaccgccagctccttcctggacaatgacgagctg
gagaggacaggtattgatctgggaactactggaagacttcaactcatggccagactggcc
gaaggtactggtctgcagatcccacctgctgcacaacaggcccttcagatgagtggctcc
atggtagccatggctgcagctactgctgctatgaaccctggattaagttttaacatcaac
gtgcccacaaaccaagctttgaatctaccatcgcaaccaattgcaacacactgtttccag
ctgtctaacatgttcaatccaaactcagaaaatgatcctggttgggaaatcgaaattcag
gatgatgtcattgaagagtgcaacaaacacggtggagtcattcatatatacgtggacaag
aaatccgctgaaggtaatgtctatgtgaagtgtcccaccattcctgctgccatggctgca
gtcagtgcgttacatggacgctggtttggaggtaaaatgatcacagcagcttatgtccca
cttcctacataccacaaccttttcccagagtcagtgcaggctacacagcttcttatgccc
agtcgccggtga
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