KEGG   Ctenopharyngodon idella (grass carp): 127522599
Entry
127522599         CDS       T08802                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X1
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
cide  Ctenopharyngodon idella (grass carp)
Pathway
cide03018  RNA degradation
cide03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cide00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    127522599
  09123 Folding, sorting and degradation
   03018 RNA degradation
    127522599
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cide03019]
    127522599
   03041 Spliceosome [BR:cide03041]
    127522599
Messenger RNA biogenesis [BR:cide03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     127522599
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     127522599
Spliceosome [BR:cide03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    127522599
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 127522599
NCBI-ProteinID: XP_051768691
LinkDB
Position
11:complement(15493563..15498347)
AA seq 148 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVISKGRGRGGMQQNKPQGKGRGGGPGRGGGAGRGIFGG
RGRGMTGTGRGQQQDKKPGKPQGVKNPN
NT seq 447 nt   +upstreamnt  +downstreamnt
atgctcccgttatctttactgaagacagcacagaaccacccgatgctggtggagttaaag
aatggtgagacgtacaatggtcatctggtcagctgtgacaactggatgaacatcaacttg
agagaagtcatttgcacctcacgggatggagataaattttggaggatgccggaatgctac
atcagaggaagcaccattaaatacttacgaatccctgatgaaatcatagatatggtgaaa
gaggaagtaatatcaaaggggcgtggccggggaggtatgcagcagaacaagccacaggga
aaaggcagaggaggtggacctggaagaggtggtggagccggcagaggtatttttggtggc
cgtggcagaggcatgacgggaactggccgtggacagcaacaagacaaaaagcctggaaaa
ccacaaggtgtcaaaaacccaaactaa

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