Ctenopharyngodon idella (grass carp): 127522879
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Entry
127522879 CDS
T08802
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03013
Nucleocytoplasmic transport
cide03015
mRNA surveillance pathway
cide03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127522879
09122 Translation
03013 Nucleocytoplasmic transport
127522879
03015 mRNA surveillance pathway
127522879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127522879
03041 Spliceosome [BR:
cide03041
]
127522879
03009 Ribosome biogenesis [BR:
cide03009
]
127522879
03012 Translation factors [BR:
cide03012
]
127522879
Enzymes [BR:
cide01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127522879
Messenger RNA biogenesis [BR:
cide03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127522879
mRNA cycle factors
Stress granule specific factors
127522879
Spliceosome [BR:
cide03041
]
Complex C
Other components
EJC/TREX
127522879
Ribosome biogenesis [BR:
cide03009
]
Eukaryotic type
90S particles
Helicases
127522879
Translation factors [BR:
cide03012
]
Eukaryotic type
Initiation factors
eIF-4
127522879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
TniB
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
127522879
NCBI-ProteinID:
XP_051769185
LinkDB
All DBs
Position
11:complement(17599404..17604204)
Genome browser
AA seq
406 aa
AA seq
DB search
MAAAAAPVRKRILKEEDMTKIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQ
QRAIKQIIKGRDVIAQSQSGTGKTATFCISVLQCLDIQVRETQALILAPTRELAGQIQKV
LLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV
LDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS
SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI
GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgccgcagctcccgtgaggaagaggatcctgaaggaggaagacatgacgaaa
atcgagtttgagacgagtgaagaggtcgatgtgacgccgacgtttgacacgatgggcctg
agggaagatttactgcgcgggatctacgcgtacgggtttgagaagccatcagccatccag
cagagagccatcaaacagatcatcaagggaagagacgtcatcgcccagtctcagtctgga
accggtaaaacagccacgttctgtatctcagtgctgcagtgtttggatatacaggttcga
gagactcaagcactgattttggctccgaccagagagttagcaggacagatccagaaggtg
ctcctggcgttgggtgactacatgaacgttcagtgtcacgcctgtatcggaggcacaaac
gtgggagaagacatcaggaagctggactacgggcagcatgtggtggcaggaacgcccggc
cgcgtgttcgacatgatccgcaggaggagtttgaggactcgtgccattaagatgctggtg
ttggatgaagcggatgaaatgctcaacaagggttttaaggaacagatttacgacgtgtac
cgatacctgccgcccgccactcaggtgtgtctgatcagcgccacgctgccacacgagatc
ctggagatgaccaacaagttcatgaccgaccccatccgcattctggtcaaacgtgatgaa
ttgacactggaggggatcaagcagtttttcgtggctgtcgagcgagaggagtggaagttt
gacacactgtgtgacctgtacgacacgctgaccatcacgcaggccgtcatcttctgcaac
accaaacgcaaggtggactggctgacagagaagatgagggaggcgaacttcaccgtgtcg
tcgatgcatggagacatgccacagaaagagcgagagtccatcatgaaggagttcagatct
ggagccagtcgagtgttgatctccacagacgtttgggccagaggtctggatgttcctcag
gtttctctcatcattaactacgatcttcccaacaacagagagctgtacatccacaggatt
ggtcgatcgggtcgttatggcaggaagggtgtggccatcaactttgtgaagaacgacgac
atccgtatcctccgtgatattgagcagtactattccacacagatcgatgagatgcccatg
aacgtggccgacctgatctga
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integrated database retrieval system
