Ctenopharyngodon idella (grass carp): 127522924
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Entry
127522924 CDS
T08802
Name
(RefSeq) LOW QUALITY PROTEIN: neurofascin homolog (chicken) a
KO
K06757
neurofascin
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide04514
Cell adhesion molecule (CAM) interaction
cide04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
127522924
04517 IgSF CAM signaling
127522924
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cide04515
]
127522924
Cell adhesion molecules [BR:
cide04515
]
Immunoglobulin superfamily
L1 family
127522924
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
ig
fn3
Bravo_FIGEY
V-set
Ig_VEGFR-1-like_5th
Ig_5
C2-set_2
Ig_6
Ig_PDGFR_d4
VEGFR1-3_N_Ig-like
BiPBP_C
Izumo-Ig
FN3_DSCAM-DSCAML_C
Fn3_PBP1
Fn3_ROS1
DUF3157
Motif
Other DBs
NCBI-GeneID:
127522924
NCBI-ProteinID:
XP_051769256
LinkDB
All DBs
Position
11:9607065..9675351
Genome browser
AA seq
1387 aa
AA seq
DB search
MWTQGRWAALAVLSIILMLSKEAAPIEVPLDLKQPPTIVKQSLKDYIVDPRDNIIIECEA
KGNPVPTFQWRRNGKFFNVGKDPRVTMRSRSGTLEIRSSGKPEDYEGEYQCYAANDFGTA
ISNKILLRVSKSPLWPKEVLEPVVVREGASLVLPCNPPPGLPPPETFWMDSSIMPIAQDK
RVSMGLNGDLFFSNVLAKDANTDYSCNARFEFTHTIQQKNPYTLKVQTKEPYNDTFLNST
DLYGARNVPETQPTFLSPKGLSSSKMVLRGEQLLLECIAAGVPTPTINWFKRGGDLPAKK
VKLENFNKTLRILDVSEEDSGGYICMASNKIGSIRHSVEVQVKAAPYWLDKPTNLVLAPD
ENGRLVCRANGNPKPTIQWLVNGEPIETSLPNPNQQVLGDTIMFHSVQIGSSAVYQCNAS
NEHGYLLANAFVSILDMAPRMLGPKNQLIKVIENNRTFLDCPFFGSPFPVLRWFKNGLGS
GLDGGQYKLYHNGTLEIKQARPEDQGTYTCVASNILGKMENQVRLEVKEPTRIVRAPEHV
TQPRGSTVRFDCRVKHDPSLYAPVTWLKDDKPLSFSWIGRLKKEDDSLTIHNVNPEDGGT
YTCIAKTEIDEDSASARLTVIEDDISSASNRSASAGRPDPPQDLELSDPSARSVRLTWVP
GNENNSPVTHFLVQFEEDRWEPGKWQNLSIYDGNLNSVNLQLSPFVNYQFRVISINAVGQ
SQPSHPSARYQTSGAPPDVIPGGLKGWGSKKNNMEITWQALRNTERNGPNLRYVVSWRRK
DTEEEWNNITTTRAKHIIPDTDTYVPYEIKIQAVNDFGHSPESNIVIGYSGEDKPSAAPT
ELRVSKINSTKVNVHWVSVDPSTVNGEFKEYKLYYWREASLIKGLKVNKTKLHKGFFTTA
EHPSGILTELFPYSKYKMYMVVANREYEGPQSNTVEFYTKEGEPGAPKYFRIQRHTDVVH
LKWDKPLEPNGILIGYTLQYHTVNGTQMGEKKVQSFPANVTEFVMNLPNRFTRFKFYLAA
RTQVGAGEVYAVESPHFANEGTPDTDSTVVAVNFTDALMFETPPPPPPLSTDPIPTILTP
EPATPAPTTAAPPKPTSISTTTTTTTTTTTTTTTTTTTTTTTTTASTTLLPVRPMSPKTV
DWKMLAPNVKIWNLTVDANNDYANVSWKHNFSVDNSEFVLEFTLDSNESMKSIQVNHQPP
IKLAGLVAGAKYRLRVYSHEHNSISSDYVTFETGRAYKETEDIATQGWFIGLMCAVALLV
LILLIVCFIKRSRGGKYPVRDKKDLPLDAVDAKDQDGSFDYQNENRSLERESSDEDNKPL
QGSQTSLDGNVKESDDSLVDYGEGGDGQFNEDGSFIGQYTVKKDKEETEGNESSEATSPV
NAIYSLA
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atgtggacgcaggggcggtgggcggcactggctgtgttgtcaataatcttgatgctgtca
aaggaagcggctccaattgaagtcccactggacctgaaacagccccccaccattgtgaag
cagtcactaaaggactacattgtggaccccagagataacatcatcattgaatgcgaggcc
aaggggaacccagtgccaacgtttcagtggcggcggaatggaaagttctttaacgtgggg
aaggacccgcgggtgaccatgcggagtcgttctggaactctggagatcagaagcagcggg
aaacctgaagattatgaaggagagtaccaatgctacgccgccaatgactttggcacagcg
atttccaacaaaatcctgcttcgagtgtcaaagtctccgctgtggccgaaagaggttctg
gagccagtggttgtgcgtgagggggcatcacttgtcctgccctgcaaccctcctcctggt
ctcccccctcctgaaaccttctggatggacagctccattatgcccatagcacaggacaag
agggtgtcaatgggcctgaatggtgacttgttcttctccaatgttctggctaaagatgct
aacactgactacagctgtaacgctcgcttcgagttcacacacaccattcagcagaagaac
ccctacacccttaaagtgcaaacaaaggaaccttataatgacacctttctcaactccact
gatctgtatggtgcacgtaatgtaccagaaacccagcctacctttctgtctccgaagggc
ttgtccagctccaagatggtgctccgaggggaacagcttcttctggagtgtatagcagct
ggagtcccaactcctaccattaattggttcaaaagaggaggagacctgccagcaaaaaaa
gtcaagcttgagaacttcaataaaactttacgcatcctcgatgtgtccgaagaagactct
ggtggctacatctgcatggccagcaacaagatcggcagcattcgccattccgttgaagtc
caggtcaaagctgcaccctattggctagataagcccaccaatttggtgcttgcccctgat
gagaatggacggttggtgtgtcgtgccaatgggaaccctaaacccactatccaatggctg
gtgaatggggaacctattgaaacttcactaccaaacccaaaccagcaagttcttggtgac
accatcatgttccattcggtccagatcggcagcagcgcggtgtaccagtgtaacgcctcc
aatgagcacggttacctactggccaatgcttttgtcagcatcctggacatggcaccgcga
atgctaggaccaaagaaccagctgatcaaagtaattgaaaacaacaggaccttcctcgac
tgccctttttttggctcaccgttccctgtactgcgctggtttaagaatggcctaggcagt
ggtctggatggtggtcagtacaagctgtaccacaatggtacattggagatcaagcaagcc
cggccagaagaccaaggcacctacacctgcgtcgccagcaacatcctgggcaagatggag
aatcaggtgcgcctggaggtcaaagagcccacaagaatagtgcgggcccccgagcatgtc
acacaacccagagggagcacggttcgctttgactgtcgagttaaacatgatccttccctt
tatgccccggtcacatggctgaaagatgacaaacctctcagcttcagctggattggtcgg
ttgaaaaaggaggatgactccttgactattcacaatgtcaatccagaagatggaggaacc
tacacatgcattgccaaaactgagatagatgaggactctgcctcagctcgccttacagtt
atagaggatgacatctcttctgcctcaaatcgtagtgcctctgcaggtcgacccgaccct
cctcaggatcttgagctctcggacccttcagcacgtagtgtcagactcacctgggtgcct
gggaatgaaaataacagtcctgttacacatttcctcgtccagtttgaagaggacaggtgg
gagccggggaagtggcagaacctgtctatatatgatggcaacctaaactcagttaacctg
cagctgtcaccctttgtcaactaccagttcagagtgatttcaatcaatgccgtgggccag
agtcaacccagccacccctctgcacgctatcagaccagcggagcccctcctgatgttatc
ccaggtggtcttaaaggctggggaagcaagaagaacaacatggagatcacatggcaggcc
cttcgcaacacagaaaggaatgggccaaacctgcgatatgtggtctcttggagaagaaaa
gacacagaggaagagtggaataacataactacaaccagagcaaagcacattatccctgat
acagacacctatgtcccgtacgagatcaaaatacaggccgttaatgactttggacatagc
ccagagtcaaacatagtcattggttattctggggaagacaaaccgtctgctgcaccaaca
gaactcagggtgtcgaagatcaacagcactaaagttaatgttcactgggtgtctgtggac
cccagcactgtgaatggagagtttaaagagtacaagttgtactactggcgggaggccagc
cttataaagggcctgaaagtgaataagacaaagttgcataaaggtttcttcaccactgcc
gaacatccctctggcatcctgacagagctttttccatacagcaaatataagatgtacatg
gtggtggctaatagagaatatgagggaccacaaagcaacactgtggagttttacaccaag
gagggagagccaggggctccaaagtactttaggattcagaggcacacagatgtggttcac
ctgaagtgggacaagccactggagccaaacggcatcctgattggatacacactccaatac
cacacagtgaacgggacgcagatgggagagaagaaggtccagagttttccagccaatgtt
acagagttcgttatgaatctgcctaaccgcttcacccggttcaagttctacctagcagct
cgcacacaggtcggcgcaggagaggtgtatgccgtggagtcgccacattttgcgaatgaa
ggcaccccagatactgactctacagttgtagccgttaactttacagatgccttgatgttc
gaaactcctcctcctccccctcccctctccactgacccaatcccaacaatacttacccca
gaaccagccacaccagcccctacaactgctgctccacccaaacctacttccatttccacc
actactaccactacaacaactactactactacaaccaccacaactactacaactaccacc
actactacaacagcttccaccacacttcttcctgttcggcccatgtctcctaaaacagtg
gattggaaaatgctggccccgaatgtaaagatctggaatctgaccgtggatgctaacaat
gactatgctaacgtcagctggaagcacaacttctccgttgacaacagcgagtttgtgcta
gagttcacactggacagtaatgagtcgatgaaaagcatacaagtaaaccaccagcctccc
attaagctggctgggctggtggccggggccaagtatcggttgcgggtgtattcccatgag
cacaactccatcagcagcgactatgtcacgttcgagacaggcagagcctacaaggagacg
gaagacatcgctactcagggttggttcattgggctgatgtgtgccgtggctttattggtt
ctcatcttgctcattgtttgtttcatcaagaggagtcgtggaggaaaatacccagtgaga
gataagaaagacctccccttagatgctgttgacgctaaagaccaagatgggtcatttgac
tatcagaacgagaacaggtctcttgaaagggaaagcagcgacgaagacaacaaaccattg
cagggtagccaaacgtcccttgacgggaacgtaaaagagagcgacgacagtcttgtggac
tatggtgaaggaggggatggccagttcaacgaagacggctccttcatcggccagtacaca
gttaagaaggacaaagaggagacggaaggaaacgagagctcagaagccacgtcacctgtt
aatgccatctactctctggcatag
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