Ctenopharyngodon idella (grass carp): 127523240
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Entry
127523240 CDS
T08802
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
127523240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cide03400
]
127523240
DNA repair and recombination proteins [BR:
cide03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
127523240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
127523240
NCBI-ProteinID:
XP_051769681
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Position
12:complement(17124370..17135042)
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AA seq
936 aa
AA seq
DB search
MAVQPKQNLSMDSASEHGFLNFYFSMPEKPDTTVRVFDRNDYYTVHGKDAVFAAKEVFKT
NGVIKNLGTGNKRLESVVLSKMNFESFVRDLLLVRQYRVEVYKNASKSSKDHDWQISFKA
SPGNLTQFEEILFGSGGGPGEGAAGVVGVRLGTGADGQRVVGVGYVDSTLRKLGVCEFPD
NDQFSNLEALLVQIGPKECVLPGGDAGGDLGKLKQVVQRGGILLTDRKKSEFTTKDIVQD
LNRLLKARKGETVSSAALPEMEKQIAMSCLEAVIKYLELLSDEANFGSFKMTTFDLNQYM
RLDNAAVQALNLFQGSSDDATGTHSLAGLLNKCRTPQGQRLVNQWIKQPLIDKNKIEERL
DLVETFVEDSELRKSCQEDLLRRFPDLNRMAKKFQRQSSTLQDCYRVYQAVGQLPNLVLA
LERYCGKHQILLHAAFISPLNDLISDFSKFQEMIETTLDMNQIEHHEFLVKPSFDPTLSE
LRENMDRLEKAMQAALSSAARELGLEAAKTVKLESNAQIGYFFRVTCKEEKSLRNNKKFT
TLDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIAAGYVDPVQTLNEVIA
QLDAVVSFAVVSNAAPVPYIRPKILEKGSGRLIVKAARHPCVEAQDDVAFIPNDVTFTRG
EEMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIK
GVSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFCLF
ATHFHELTALAQQVPTVRNLHVTALTTDSTLTMLYKVKKGVCDQSFGIHVAELANFPKHV
IANAREKALELEEFQDISKAGEEAGPEAKKRCLEKQEGEKIIEAFLAKVKSMPVDGMSDE
AVKEELRKLKAEVIGQNNSFVNEIVSRSSKGKLTSA
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacaaaatctgtccatggacagtgcatctgaacatggatttttg
aatttttatttttctatgcctgagaaaccagacaccacagtgagagtttttgatcgaaac
gattactatacggtacacggaaaagatgcggtttttgcagctaaggaggtgttcaagacg
aacggagtcatcaaaaacctgggcacaggaaacaagaggttggagagtgtggtcctcagt
aagatgaactttgagtcatttgtgagggacctgctgctggtcaggcagtaccgggtggag
gtgtacaagaatgccagtaagagtagcaaagatcatgactggcagatatcttttaaggct
tctccaggaaacctgacccagtttgaggagattttgtttggcagtggaggaggacctggg
gagggtgcagctggtgtcgtcggggttcgtcttggcaccggggctgatggacagcgtgtt
gtcggtgttggctatgtagacagcaccctcaggaaactcggtgtgtgtgaattcccagac
aatgatcagttttccaatctggaggctcttcttgtgcagatcgggcccaaagagtgtgtg
cttcctggaggagatgcaggtggagaccttgggaaactcaaacaggtggtacagcggggt
ggcattctgctcacagacaggaagaaatctgagttcacaaccaaagacattgtgcaggat
ctaaatcgcctactgaaagcccgcaagggagagacggtgtccagtgctgcccttccagag
atggagaaacagattgcaatgtcttgcttagaagcagtcatcaaatacctggagctcctc
tcagatgaggccaattttggatccttcaagatgaccacatttgacctcaaccagtacatg
cgtctggataatgctgctgtgcaggccctgaatctcttccagggttcctctgatgatgcg
acaggcacacactccctggcaggccttttaaacaaatgtcgtaccccacaaggacagcgg
ttggtcaatcagtggatcaaacagcctctcattgacaaaaacaagatagaagaaagactg
gaccttgtggagacttttgtggaagactctgagctgaggaaaagttgtcaagaggatctt
ctccgccgttttccagacctgaaccggatggcaaagaagttccagcgtcagagctctact
ttacaggactgttatcgggtctatcaagctgtggggcaactgccgaatctggtgctggca
ttggagagatactgtgggaaacatcagatcctcctgcatgcagcattcatctctcccctt
aacgacctcatctctgacttctctaaatttcaggagatgattgaaaccacactggacatg
aaccagattgagcatcatgagttcctagtaaaaccctcatttgatcccacattgagtgag
ctcagggagaacatggatcgtttggagaaagccatgcaggccgccttgagcagtgcagct
cgtgagcttgggctggaagcagccaagactgtgaagcttgaatccaatgcacagatcggt
tactttttccgagtgacgtgcaaagaagaaaagagccttcgcaacaacaagaaattcaca
actttagatgttcagaagaacggagttcgattcactaacagtaagctgagctctttgaat
gaagagtacactaaaagcagagaagagtatgaagaggctcagaacgccatcgtcaaagag
atcatcagcattgccgctggctatgtggacccagtacagactctaaatgaggtgatagct
cagctggatgcagtggtgagctttgctgtggtgtccaatgctgccccagtgccttacatt
aggccaaaaatattagagaaaggatcagggagactcattgtgaaagcagcaagacatccc
tgtgttgaagcccaagatgatgtggcttttattcccaatgatgtcaccttcacaaggggc
gaggagatgtttcatatcatcacaggtccaaatatgggtggtaaatcaacatacatccgt
caggtgggtgtgatcgtgctgatggcacagattggctgttttgtgccatgtgatgaggca
gagctgagcgtggtggactgtgtgctcgctcgagtgggtgcaggggacagccaaatcaaa
ggagtgtccacctttatggctgagatgctggagacggctgctattcttcgatcagccaca
gaggattctctcatcattattgatgaactgggcagaggcacatccacatacgatggcttt
ggtctggcctgggcaatctcagagtacatcgctacccgcctcaagtccttctgcctgttt
gccactcacttccatgagctgacggcactggcgcagcaggtgcccactgtccgtaacctc
catgtcactgccctgaccacagatagcactctcacaatgctctacaaggtgaaaaaaggc
gtgtgtgaccagagctttgggattcatgtggcagagcttgctaacttccccaagcatgtg
attgctaatgcacgggagaaggctttggagcttgaggagttccaggatatttccaaagcc
ggggaggaagctggacctgaagccaagaaacgctgcctggagaaacaggagggggagaag
atcattgaggctttcctggctaaggttaaatcaatgcctgttgacggcatgtctgatgag
gctgtcaaagaggagctgcgcaaactcaaggcagaggtcatcggccaaaacaatagcttc
gtcaatgagatagtgtcacgttcttccaaaggcaaactgacttcagcctga
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