Ctenopharyngodon idella (grass carp): 127523521
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Entry
127523521 CDS
T08802
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03430
Mismatch repair
cide03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
127523521
03460 Fanconi anemia pathway
127523521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cide03400
]
127523521
DNA repair and recombination proteins [BR:
cide03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
127523521
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
127523521
NCBI-ProteinID:
XP_051770249
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Position
12:13020907..13027148
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AA seq
854 aa
AA seq
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MSDSCPGSAGAIKAIDKQSVHQICSGQVVLSLATAVKELVENSIDAGATNVDVKLKDSGT
ELVEVSDNGKGVEEQNFEGLTLKHHTSKLRDFSDLIHVETFGFRGEALSSLCALSDISVV
TCHESAQIGARLVYDHDGRLTQRVPHPRQHGTTVTLQKLFSTLPVRHKEFHRNIKKEYSK
MIFVLQSYCIISTGVRITCTNQMGQGKRTTVLCTSGSNSMRDNIGAVFGPKQLQSLIPFQ
QISPNESIKEDYGLGGVDVPKDLFIIEGFVSQGDHGVGRSATDRQFFFINKRPCDPVKVS
KLVNEVYHMYNRHQYPFVALNITVASDCVDVNVTPDKRQILLQEEKLLLAILKSSLIAMF
ETGVNKISLNHISPAITSLCRPTETNVGLEDCETGSVSEALPDDGPPKTSINLAGLKEAF
SNHQAPGIGSKQSSHKAACAGPSQKKMFSFVSCSKKITDIMRPPLKSSPSFADVTSNKST
VCLAKFKSTFDSDADDSGAANQSSAEDHKEILHENNSDKKLVLHPIIHETDVKAETIDKS
VDEKFWSHEPLVPETKSEQNQDRIYSPEAKRARREDEPPAWSCLVDSKNKNASLQLDSPV
SRQKKTVLLQFSMQELSKRMQKLQAQVTENNDRELKYRRFRAKINPGENQSAEDELKKEI
SKDMFKDMEIIGQFNLGFIITKLKSDLFIIDQHATDEKYNFEMLQQNTVLKGQRLIVPQN
LHLPAISETVLMENLEIFRKNGFDFLIDEDAQVMERVKLVSLPTSKNWTFGPSDIEELIF
MLSDSPGIMCRPSRVRQMFASRACRKSVMVGTALNISEMKKLVLHMGEIEQPWNCPHGRP
TMRHLANLDMISHD
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattcgtgcccaggttctgctggagccataaaggcaatagacaaacagtctgtg
catcagatctgctctggacaggtggtgctgagtctggccacagctgtgaaagagctggtg
gagaacagcattgatgctggtgccacaaatgttgatgtcaagctaaaagatagtggaaca
gagttggtggaagtgtccgacaatggaaaaggtgttgaggagcaaaactttgagggacta
actttaaaacatcacacctctaaattaagagatttttccgacctgatacacgtggagacg
tttgggttccgtggtgaagctctcagctcactttgtgctctcagtgatattagtgtcgtg
acctgtcatgagagcgctcagatcggagctcggctagtgtatgaccacgatggtcgtctc
actcagcgtgtgccgcatccccgtcagcacggcactacagtcactcttcagaagctcttc
tccacgttacctgttcgacacaaggagttccaccgcaacatcaaaaaggaatattcaaag
atgattttcgtcttgcagtcctactgcatcatctccactggtgtgcgcattacatgcact
aaccagatgggacaaggcaaacgcaccacagtactgtgcacaagcggcagtaacagcatg
agagacaacattggagctgtgtttggacctaaacagcttcaaagtttgattcccttccaa
caaatatctcctaatgaatcaattaaggaagactatggtctcggtggggtagatgttcca
aaagaccttttcatcattgaagggtttgtgtcacaaggggatcatggtgttggtcgaagt
gctactgacagacagttcttctttatcaataaaagaccctgtgatccagttaaggtctcc
aagcttgtgaatgaggtttatcacatgtacaatcggcatcaatacccttttgtcgctcta
aacatcactgtcgcttcagactgtgtcgacgtgaatgtcactccagataaacgtcaaatc
cttctacaagaagagaaactcttgctggccattctgaaaagctcactcattgctatgttt
gagactggtgtcaataaaatcagtctcaatcacatttctccagcaattaccagcttgtgt
agaccaactgagacaaacgttggtttagaagattgtgaaactggttcagtctctgaagct
cttccagatgatgggcccccaaagacttccatcaatcttgcaggacttaaagaagcattt
tcaaatcatcaggctccaggaattgggtcaaagcagtctagtcataaagctgcatgtgct
ggtccttctcagaagaagatgttttcctttgtgagctgctctaaaaaaattactgacatt
atgaggccacctttaaaatcttctccaagttttgccgatgttacttccaataaatcgact
gtttgtctagctaaatttaaaagcacctttgatagtgatgctgatgattctggggctgca
aaccaaagttctgctgaagatcataaagagattctacatgaaaacaattcagacaagaag
ttggttttacaccctattatacatgaaactgatgttaaagctgagactattgataaatct
gtagatgagaagttctggagtcatgaacctttggtgccagagacaaagtcagaacaaaac
caggacagaatctacagtcctgaagctaaaagagctagacgtgaagatgaacctccagca
tggagctgtttggtggactccaaaaacaagaatgcttccctgcaattggattcacctgtc
agcagacagaagaaaactgtgcttttgcagttttctatgcaggaactttctaaaaggatg
cagaagctgcaggctcaggtgacagagaacaatgatcgagagctaaaatatagacgattc
agggcaaagattaaccctggagaaaaccagagtgctgaagatgagcttaagaaagaaata
agcaaagatatgttcaaggatatggaaatcattggtcagtttaacctgggttttattatc
accaagctgaaatctgaccttttcataatcgaccagcatgccacagatgaaaagtacaat
tttgagatgctacaacagaatacggtcttaaagggacagcggctcatagttccacaaaat
ctccacctcccggctatcagtgaaacagtgctcatggaaaaccttgaaatcttcagaaag
aatggttttgacttcctcattgatgaggatgctcaggttatggagagggtgaagttggtg
tctttacctacaagtaagaattggacctttggcccaagtgacattgaagaactcatcttc
atgcttagcgacagtccaggaatcatgtgtcgaccttctcgagtaaggcaaatgtttgca
tccagggcttgtcgcaaatcggtgatggttggcactgctctcaacatcagtgaaatgaag
aaactagtgcttcacatgggggaaattgaacagccctggaattgtccacatggtagaccc
accatgagacacctcgctaatctggatatgatttctcatgactga
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