KEGG   Ctenopharyngodon idella (grass carp): 127523756
Entry
127523756         CDS       T08802                                 
Name
(RefSeq) helicase-like transcription factor isoform X1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
cide  Ctenopharyngodon idella (grass carp)
Brite
KEGG Orthology (KO) [BR:cide00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cide04121]
    127523756
   03400 DNA repair and recombination proteins [BR:cide03400]
    127523756
Enzymes [BR:cide01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     127523756
Ubiquitin system [BR:cide04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    127523756
DNA repair and recombination proteins [BR:cide03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    127523756
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_4 RING_XB3-XBAT31 zf-ANAPC11 ResIII zf-Nse HDA2-3 Prok-RING_4 zf-RING_6 zf-RING_11 PAXIP1_C zf-rbx1 SYNE1
Other DBs
NCBI-GeneID: 127523756
NCBI-ProteinID: XP_051770787
LinkDB
Position
2:14125522..14136858
AA seq 966 aa
MQSSNKSTNISPRTAAHPHSPSTSASPRYALIDFMDVGRTETISQEIANLTEDAGQDLEA
EESVQIGSIQGSVVGLRYYTGTVNRGEMVSLVREPHNPYDRNAVMVANVYGSQVGHIKKE
LAAPMAYIMDNNLARVEGVVPFGNTNKFTMPVILTFWGKEENREAVHNQMTRCGFRLGTD
LKGGASQTYSGRNLLGLSSKIAAIPLTVEELKNAFDKLFDDLMEDKTREMEPAEAVCTPL
LPHQKQALSWMTSRENSNDLPPFWEEKNGLYFNVLTNFAVKERPLKVLGGILADDMGLGK
TLTTIALIVSNFHNGKPLPLEQCEGSSMPSTTRKKAASKEKSGNREEEPVGSSPLKRQHD
YNVIVDTDDEDAPQKKAKTTKKTAKKSASTKKGVVLLDDVDFAAALECTSSQAVPTKKRV
KKSSGTGRGPSGASGGSGARATLIVCPLSVLSNWLDQFEQHIRADVTLKVYLYYGAERSR
SVSLLSGQDVVLTTYNVLSSDFGNKASSPLHQVNWLRVVLDEGHVIRNPSALQSKAVLEL
QSERRWILSGTPIQNSLKDLYMLLSFLKLKPFDVKEWWNRIIQRPVTMGDRFGLKNLQAL
VKGITLRRTKNSKVAGRTVVQLPARRVFVQHVTLSEEEREEYEQVKREGRNIVGRYFQEG
TVMTNYADILAILVRLRQCCCHPSLVGKYTVAGDPGTLSELRERLINKITLVLSSGSDEE
CAICLDSLRQPVITYCAHVYCRPCICEVIRSEKEQARCPLCRAQIKTKELVEYPGEEVEA
QSAAGENWRSSSKVDALMSNLLKLRNEDPTVKSLVVSQFTRFLDLLEVPLREYGFSFTRL
DGSMNQKTRAKAIQDFQDSSSGSPTIMLLSLKAGGVGLNLTAASHVFMMDPAWNPAAEDQ
CVDRCHRLGQSRDVVITKFIVKDSVEENMVKIQKKKQELVEKAFGVKNSQDLKQARIDEI
RTLMEI
NT seq 2901 nt   +upstreamnt  +downstreamnt
atgcagtcatcaaacaaatcaacaaacatcagtccccgcactgctgctcaccctcacagc
ccctcgaccagcgcctcgccacgatacgctcttatagatttcatggatgttggccgcaca
gagaccatatcccaagaaattgcaaatctaacagaagatgcagggcaggacctggaggca
gaggagagtgttcagattggatcaattcaaggctcagttgttggtctgcgctactacact
ggaacggtcaatagaggagagatggtgtctttggtgagagagccgcacaatccctatgac
cgaaatgcagtgatggttgccaatgtgtatggcagtcaggtggggcacatcaagaaagag
ctggcagccccaatggcctacattatggacaacaatttggccagggtggaaggggtggtg
ccctttgggaatactaataaattcacaatgcctgtgatcctcacattctggggcaaagag
gagaaccgagaagctgtgcataatcagatgacacgctgtggtttcagacttggcactgac
ctcaaaggaggtgcttcacaaacatattcgggtagaaatctgcttggattgtcctcaaaa
atagctgccattcctttgactgtagaagagctgaaaaatgcctttgacaagctctttgat
gatttgatggaggataaaaccagagaaatggagccagctgaggcagtgtgcactcctctg
ctcccacatcaaaagcaagcgctctcatggatgacctctcgtgaaaacagcaacgatctg
cccccgttctgggaggagaaaaatggcctttactttaacgttctcacaaactttgcagtg
aaggaaaggccattgaaagtgcttggtgggattttggctgatgacatggggctgggcaaa
accctcaccaccattgccttaattgtctctaatttccacaatgggaaacctcttccactg
gaacaatgtgaaggatcatccatgccttctactaccagaaagaaagcagcctcaaaagag
aaaagtggaaaccgtgaagaggaaccagtggggtcatccccattgaaaagacagcatgat
tacaatgtcattgttgacacagatgatgaagatgcacctcagaagaaagcaaaaaccaca
aagaaaactgctaaaaagtctgccagcaccaagaaaggagtggttctgctggatgatgta
gactttgctgccgctctggagtgcacttcctcacaggctgtgcctacaaaaaagcgtgtg
aagaagagttctggcactggtaggggcccatctggagccagtgggggctcaggggccaga
gccactttgattgtatgtcctctgtctgtccttagtaactggctggaccagtttgagcaa
catatccgagcagatgtcacattgaaagtgtacctgtactacggcgctgagcgcagccga
tctgtcagccttctgtctgggcaagatgtggttctcacaacatacaatgtgctttcatca
gattttggaaataaagccagcagtcctctgcaccaagtgaactggctgagggtggtgctg
gatgagggtcacgtcatcagaaatcctagtgcacttcagagcaaagctgtactggagctc
cagtcagagcgcaggtggatcctgtctggaactcccattcagaactctctaaaggatctg
tacatgctgctgtcctttttgaagctgaagccttttgatgtgaaggagtggtggaacagg
ataattcagagacctgtgaccatgggcgacagatttggactaaagaacttgcaagcgctg
gtaaaggggatcacactgaggcgcactaagaacagtaaagtggctgggcgcacggtggta
cagttacccgcacggagagtgtttgtgcagcatgtgactctctctgaggaagagagggag
gagtatgaacaggtcaaaagggagggcaggaacattgttggcaggtatttccaagaggga
acagtcatgacaaactatgctgacatactggccatcctggtccgtctgaggcagtgctgc
tgtcaccccagtcttgtgggcaaatacacagttgcaggtgatcctgggaccctcagcgag
ctgcgggagcgtctcatcaataagatcacgttggtgctgagctctggctcagacgaagag
tgcgccatctgtttagactccctacgtcagcctgtcatcacctactgcgctcatgtgtac
tgcaggccctgcatttgtgaggtcatccgctcagagaaggagcaggccaggtgtcctctg
tgtcgtgctcagatcaagactaaagaactggtggagtatcctggagaagaagtggaggct
caatcagcagctggggagaattggcgatcaagttccaaagtggatgctttgatgagcaac
ctgttgaagcttcgcaatgaagaccccactgtgaagagtcttgtggtctctcagtttacc
aggtttttggatcttttagaggttcccttgagggaatatggattctctttcactcgactg
gatggctctatgaatcagaagacccgagcaaaggccattcaggactttcaagactcctct
tcaggaagtcccaccatcatgttactgtcacttaaagctggaggggttgggcttaatcta
actgctgcttcccacgtctttatgatggatccagcctggaatcctgcagcagaagatcag
tgtgttgacagatgtcatagattgggccagagtagagatgtggtgatcactaagtttatt
gtgaaagactctgtggaggagaacatggtgaagattcagaagaagaagcaggaacttgtg
gagaaagcttttggagtgaaaaactcacaggacctaaaacaggcacggatcgatgagatc
cgaaccctcatggagatttag

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