Ctenopharyngodon idella (grass carp): 127523794
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Entry
127523794 CDS
T08802
Name
(RefSeq) ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
127523794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cide03019
]
127523794
03009 Ribosome biogenesis [BR:
cide03009
]
127523794
03036 Chromosome and associated proteins [BR:
cide03036
]
127523794
Enzymes [BR:
cide01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
127523794
Messenger RNA biogenesis [BR:
cide03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
127523794
Ribosome biogenesis [BR:
cide03009
]
Eukaryotic type
90S particles
RNase
127523794
Prokaryotic type
rRNA processing factors
127523794
Chromosome and associated proteins [BR:
cide03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
127523794
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
Motif
Other DBs
NCBI-GeneID:
127523794
NCBI-ProteinID:
XP_051770833
LinkDB
All DBs
Position
12:9410759..9452705
Genome browser
AA seq
1289 aa
AA seq
DB search
MSFHAGRGCPRGRPATPGPMYRPTPPRYHYDPPAAPGPIYNPQGGSGYMPPHPDFMPFHF
PPPSQGSNVLPQCPLRPPVFPEPPPFPPPAPHSSDGSAPIPVQSSYPYMMPTVPPPPLPP
VPPSVPPSMPYSPSYPMSYPPQPQLPPPPSFNPAYVQPGGSYKPERPRTNTLQYKTDSCS
RSPERLRHHDDHRHRGHSYGGYGSRHNREFGGEKRDRGCSSERRRSDSPRCKADYDRGRV
PSRHRSRERYRHRDEPGSPPSDRHRKHIHSRSGSRERKRRRVEEEKERRTDGASSSRERA
VNLSRSRDAEETSTDRHEEEKGEEELLKPAWIRCTHAENYYSNDPMDQVGDSTVVGTSKL
RDLYERFEEELGRRQERAKSIRPKWEPPKTKLDQDQEESSSESECESDGGGSSCSSSSDS
EVFDVIAEIKRKKAHPDRLHEELWYNDPGQMNDGPLCKCSAKARRTGIRHSIYPGEQPVK
ECRPMSNNAGKLFHYRITVSPPTNFLTDRPTVIEYDDHEYLFEGFSCFSHTPLTNIPLCR
VIRFNIDYTIHFIEEMSPENYCVKGLELFSSYLFKDILELYDWNLTAPEENGPTGCQRFH
FMPRFVRFLPDGGKEVLSMHQVLLYLLRSSTPLVPEEEIANMLQWEELEWQKYAEECKGM
IVTNPGMKPSSVRIDQLDREQFNSSVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKL
RHLLANSPKVKQIDKQKLTQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHA
MMLPVLTHHIRYHQCLMHLDKLIGYMFKERCLLQLAMTHPSHHLNFGMNPDHARNSLSNC
GIRQPKYGDRKVHHMYMRKKGINTLINIMSRLGQDDPSPSRINHNERLEFLGDAVVEFLT
SVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAM
ANCFEALIGAVYLEGGLEEAKQLFGRLLFNSEDLRDVWLNYPPHPLQVQEPLTDRQLIES
SPVLQKLTNFEDAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATE
YLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRTKTLADL
LESFIAALYIDKDLEFVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPD
IPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQ
KRFIERKYRQELKEMRRERERQERDSDEG
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccatgctggccgcggatgcccaaggggaaggccagccactccaggtccaatg
taccggcccacaccgccgcggtatcactacgaccctcctgctgctcccggtcctatctat
aaccctcagggtggcagtggatacatgccacctcaccctgacttcatgcctttccacttc
cctccaccatcacagggttctaatgttctgccccaatgtcccttacgcccaccggtcttc
ccagagccgcccccttttcctccacctgctcctcacagctcagatggctcggctcccatc
ccggttcagagctcttacccctacatgatgcccacagtcccccccccaccattgccacct
gtgcccccctcagtgccaccctccatgccctactcgccatcatatcccatgagctaccct
ccacagccacagctcccccctccacccagtttcaatccagcttacgtgcagcccggaggt
tcctacaaacctgaacgcccccgcacgaacactctgcaatacaagacggactcatgttcc
cgctcgcccgagagactccgtcaccatgatgaccaccggcacaggggccacagctatgga
ggatatggaagtcgacataaccgtgagtttggaggagagaaacgggacagagggtgcagt
tcagagcgcaggcggtcagacagccctcggtgtaaagcggactacgatagaggacgtgtg
ccatcaagacaccgcagcagagaacgatatcggcatagagacgagccaggttcgcccccg
tcagacagacacaggaaacacattcacagtcgctcaggcagtcgagagagaaagcgccgc
cgtgtggaggaagagaaagagaggagaacagatggagcctcgagcagtcgagagagagct
gtgaacttaagcaggagtagagatgcagaggagacgtccactgaccgccatgaggaggag
aaaggagaggaagagttactcaaacctgcctggatccgctgcacacatgctgagaattac
tactccaacgacccaatggaccaagtgggtgactctacagtcgtgggaaccagcaagttg
agagatctgtacgagcgctttgaggaagagcttggccggaggcaggagcgggccaaatcc
atcaggcctaaatgggaaccacccaagaccaaactggaccaggatcaggaagagagctcc
agcgaatcagagtgcgagtctgatggaggtggtagcagctgctccagtagctctgactct
gaggtgtttgatgtcattgctgagatcaagaggaagaaagctcaccctgaccgcctccat
gaggagctgtggtacaatgaccctggacagatgaatgatggaccattatgcaagtgcagt
gccaaagccagacgaactggaattcgacacagtatttaccctggtgaacagccggtgaaa
gagtgtcggccgatgagtaacaatgccggcaagctgttccactacagaataactgtgtcc
ccacctaccaacttcctgacagatagacccacggttattgagtatgacgatcatgagtac
ctgtttgaaggcttttcctgcttttctcacacaccacttactaatatccctttgtgtcgg
gttattcgcttcaacattgattacaccatccactttatagaagagatgtcacctgagaac
tactgcgttaaaggcctggagctgttttcctcatacctctttaaagacatcttggagttg
tacgattggaacctcaccgctcctgaagaaaacggccccacaggttgtcagaggtttcat
ttcatgccacggtttgttcggttcctcccggatggaggaaaggaggtgctgtcaatgcac
caggtgctgctgtatctgctgcgcagcagcacgcctctggttcccgaggaggagatcgca
aatatgctacagtgggaggagctggagtggcagaaatatgctgaggagtgcaagggcatg
attgtcaccaaccctggcatgaaacccagctctgtgaggattgaccagttagaccgcgag
cagttcaactccagtgtcatcactttccccatcattgtgcattttggtatccgacctgct
cagcttagctatgctggagacccacagtatcaaaagttgtggaaaagttacgtgaaattg
cggcatctgctggccaacagcccaaaggttaaacaaattgacaaacagaagttaacgcaa
agggaggaagcgctgcagaagatcaggcagaagaatacgatgagaagggaggtcacagtg
gagctcagcagtcagggtttctggaagactggaatccgctctgatgtctgccagcatgcc
atgatgctgccagttctcacccaccacatccgctaccaccagtgcctgatgcatttggac
aagctgatcggttacatgttcaaggaacgatgcctgctgcagttggcaatgactcacccc
agtcatcatcttaattttgggatgaatcctgaccatgctcgcaactctctgtccaactgt
ggaatacgccagcccaaatatggagaccggaaagtgcatcatatgtatatgaggaaaaaa
ggaattaacaccttaatcaacattatgtcacggttgggccaggatgacccatcaccctcc
agaatcaatcataatgagcgcttggagtttcttggtgatgcagttgttgagttcctgacc
agtgtgcatctctactacctgttcccaagtctggaggagggaggactcgccacatatcgc
acagcaatcgttcagaatcagcatcttgctatgcttgctaagaaattggagttggatcgg
ttcatgttatatgctcacggccctgacctgtgcagagaatcagacctccgacacgccatg
gcaaactgttttgaagccctgataggggccgtttacctagaaggtggtttagaggaagcc
aagcaactgtttgggagactgctgttcaacagtgaggacctgagggatgtttggctcaac
tacccacctcatcctttacaggtgcaggagccactgacagacaggcagttgatcgagtca
tctccagttctacagaaactcactaattttgaagacgccattggagtgctgttcactcac
gtccgtctcctcgcacgggccttcactctgcgaacagttggcttcaaccacctcacccta
ggccacaaccagaggatggagttcctgggagattctattatgcagctggtggcaactgaa
tatctgttcatccacttcccagaccatcatgaaggacatttgacactcctgcgcagctca
ttggtgaataaccggactcaggcaaaggttgcagaggaattgggcatgcaggaatatgcc
atcaccaatgacaagaccaaacggcctgttgccctgcggaccaagactttagccgatcta
ctggagtcattcattgcagctctttacatagataaagacctggagtttgtgcacacattt
atgaatgtttgcttcttcccacgactcaaggagttcatcttgaaccaggactggaatgat
ccaaaatcgcagctgcagcagtgctgtttaaccttgcggacagagggcaaagagccagac
attcctctatacaaaacacttcagacagttggaccatctcatgccaggacctacacagtg
gcagtgtattttaaaggtgaacgtattggctgtggaaaaggaccaagcattcaacaagcc
gagatgggtgcagccatggatgccctggagaaatataactttcctcagatggcacatcag
aaacgcttcatcgaaagaaagtaccggcaagaactgaaggagatgagacgagagcgagag
cgtcaggagagagatagtgatgaagggtag
DBGET
integrated database retrieval system
