Ctenopharyngodon idella (grass carp): 127523820
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Entry
127523820 CDS
T08802
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cide
Ctenopharyngodon idella (grass carp)
Pathway
cide03020
RNA polymerase
cide03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cide00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
127523820
09124 Replication and repair
03420 Nucleotide excision repair
127523820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cide03021
]
127523820
03400 DNA repair and recombination proteins [BR:
cide03400
]
127523820
Enzymes [BR:
cide01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
127523820
Transcription machinery [BR:
cide03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
127523820
DNA repair and recombination proteins [BR:
cide03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
127523820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
127523820
NCBI-ProteinID:
XP_051770875
LinkDB
All DBs
Position
12:15813469..15828139
Genome browser
AA seq
1965 aa
AA seq
DB search
MHGPPSSDSACPLRLIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDAN
NPKIKDILTKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQQETEEDLTKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDMILGMDPKY
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINA
IRTHSTHPDEEDSGPYKNISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVE
FQNMATLKPSNKAFEKKFKFDCSNERALRRTLQEDVVKDVMTNAHVQSALEKEFEKMRED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPVRVVEGVQELSKKLVI
VNGEDQLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGALSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSYS
PTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPS
YSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPT
SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKY
SPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccagcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcgtcctcagcccagatgaacttaaacgaatgtctgttactgaagggggtatcaag
taccctgagaccacggagggaggacgccctaaactggggggactcatggacccccggcaa
ggggtaattgagaggtccggcagatgccagacatgtgcaggtaacatgactgagtgccct
ggtcattttggtcacattgagctggctaagccagtctttcatgttggcttcatcacaaag
atcatgaaggtcctccgctgtgtgtgtttcttctgttcaaagctgcttgtggacgcgaac
aatccaaaaatcaaagacatcttgaccaagtcgaaggggcagccacgtaagcgtctgacc
cacgtctatgacctctgtaaaggcaaaaacatttgtgagggtggagaggagatggacaac
aagtttggagtggagcagcaggagacggaggaagacctcaccaaagagaagggtcatgga
ggttgtggcagataccagccacgtatccgtcgctctggcctggagctttatgctgaatgg
aagcatgtgaatgaagactctcaggagaagaagattctcctcagccctgaacgtgtgcat
gagatcttcaaacgcatttcagatgaagaggacatgatcctgggcatggaccccaaatac
gcccgtcctgagtggatgattgtcacagtgttgcctgtgccccctcttgctgtgagacca
gctgtggtcatgcagggctctgctcgaaaccaggatgatttaacacacaagttggctgac
attgtgaaaatcaataaccagctgaagcgaaatgagcagagtggagctgcagcgcatgtt
atagcagaggatgtcaagttgcttcagttccacgtggccactatggtggacaatgaactg
ccaggtttacctagggcaatgcaaaagtctggtcgcccgctaaaatccatcaagcagagg
ctaaagggtaaggaaggacgtgtcagaggtaatctgatggggaagcgtgtagacttctct
gcccgaactgtcattacacctgaccccaacctgcagattgaccaggtgggagttccccgt
tccattgctgcgaacatgaccttccctgagatcgtcacaccctttaacattgacagactc
caagagcttgtgaggagaggtaacagtcagtaccctggagccaaatatatcatccgtgac
aatggagaccgaattgacctgcggttccaccctaaaccaagtgaccttcaccttcagatt
ggatacaaagttgaacgacacatgtgtgatggggacatcattgtgttcaacagacagccc
acactgcacaaaatgtctatgatgggccatagagtacgaatcttgccttggtcaacattt
cgactaaacctcagtgtaacgaccccatacaacgctgactttgatggagatgagatgaac
ctgcacttgccgcaatctctggagacccgtgctgagatccaggagctggccatggtgcct
cgtatgattgtcacaccacagtccaacagacccgttatgggtattgtgcaggacacactg
accgctgtgcgcaagttcaccaagagagatgtcttcttagagaggggtgaggtgatgaac
ctcctcatgtttctctctacatgggatgggaaagtgccccaaccagctatattgaagcct
cgacccctctggacgggcaaacagatcttcagcctgatcatccctgggcacattaatgcc
atccgaacacacagcactcaccctgatgaagaggacagcggtccttataaaaacatctcc
cctggagacactaaggtaattgtggaaaacggtgagctgatcatggggatcctgtgtaag
aagtcactgggaacctcagctggctctcttgtccatatctcataccttgagatgggccat
gacatcacacgactcttctattccaacatccagaccgttgtcaacaactggctgctcatt
gaaggtcactctattggtattggagactccattgccgataaggctacatatcaggacatt
cagaacactattaagaaagccaaacaggatgtgatagaggtcattgagaaagctcacaac
aatgagttggagcccaccccaggtaacactctgagacagacctttgagaaccaggtcaac
cgcattctgaacgatgctcgagacaagactggatcctctgcccagaagtcactgtcagag
tacaacaatttcaaatccatggtggtggctggttcaaaaggctctaaaattaacatttct
caggttattgctgtggtggggcagcagaacgttgagggtaagcgaatccccttcggtttc
aaacaccgcactctccctcacttcattaaagatgactatggtccagaaagtagaggtttc
gtagaaaactcctatctggccggtctcacaccaactgagtttttctttcacgccatggga
ggcagagagggtctgatcgacacagctgtcaaaactgctgagacaggttatattcagcgt
cgtttgatcaagtctatggagtcggtgatggtaaaatatgatgctacagtcagaaactca
ataaaccaggttgtccagctgaggtatggagaggatgggctggcaggagaggctgtggag
ttccaaaacatggccacacttaagccatccaacaaagcctttgagaagaagttcaagttt
gactgctccaacgaacgagctcttcgccgcactctacaagaagatgtggtgaaagatgtg
atgaccaatgcccatgtccagagtgctctagagaaagagtttgaaaagatgagggaagac
cgagagatcctgagggccattttccccacaggagacagcaaggtggtactaccgtgcaat
ctggccagaatgatctggaatgctcagaagattttccgcatcaatcctcggacaccaact
gaccttaacccagtacgagtagttgaaggagttcaagagttgagtaagaagctggttatt
gtaaatggtgaagaccagttaagcaggcaagcccaggagaatgcaactctgctgttcaac
atccacctgcgctctaccctctgctctaagagaatgactgaggagttccgtcttagcaca
gaggcttttgattggctgctgggagagattgagaccaaatttaaccaatccattgctcac
cctggtgagatggttggtgctctggctgcccagtctctgggagagcccgctactcagatg
accctgaacacattccactacgccggtgtgtctgccaaaaacgtcactctcggtgtgcct
cgtctcaaagagcttatcaacatctccaagcgacccaagaccccctcactgaccgtcttt
ctcctgggccaagcggcccgtgacgcagagagggccaaagatatcctgtgtcggttggag
cacacaaccctgcgcaaggtcactgccaacacggccatttattatgaccccaacccacag
aacactgtggtgactgaggatcaggagtgggtcaatgtgtactatgagatgcctgacttc
gatgtgacccgcatttcaccctggctgctgcgtattgaacttgaccgcaaacacatgact
gaccgtaagctgaccatggagcaaattgcagagaagatcaatgcaggatttggtgatgac
ctaaactgcattttcaatgatgacaatgctgagaaactggtattgcgaatccgcatcatg
aatagtgatgagaacaagttccaagaggatgaggaggtagtggataagatggatgacgat
gtcttccttcgctgcattgaatccaacatgctgacagacatgaccctgcaaggcattgag
caaatcagcaaggtgtacatgcatcttccacagacagacaacaagaagaaaatcatcatc
acagaagagggagaattcaaagccctacaggagtggatcttggaaacagatggagtcagt
ctcatgagggtcctcagtgagaaggacgttgaccctgtcaggaccacctccaatgacatt
gtggagatcttcactgttcttggtattgaggctgtgcgtaaggcactggaaagagagttg
taccatgtcatctctttcgacggttcttacgttaactaccgccatcttgccttgctgtgt
gacacaatgacatgcaggggtcacttgatggctatcactcgtcacggtatcaacaggcag
gacactggaccccttatgaagtgttcttttgaagagacggtggatgtgttgatggaagct
tcttcacatggtgaatgtgacccaatgaagggagtgtctgagaacataatgctgggacag
ctggctcctgcgggcactggctgctttgacctgctgttagatgctgaaaagtgcaagtat
ggcatggagatccccaccaacatccctggcatcagtgttgcaggacccacaggcatgttc
tttggttccgcccctagccctatgagtggcatgtctccagccatgactccttggaacaca
ggagccactcctgcatatggtgcctggtctcccagtgttggaagtggaatgacaccaggt
gctgcaggcttctctcccagtgccgcatccgatgccagcggcttctcgcctggctattct
cctgcctggtcccctactcctggttctcctggatcacctgggccagccagcccttatatc
ccctcaccaggagccttgtctcccaattactctccaacctctcctgcctatgagcctcgt
tctcctggtggatacacccctcagagccctggctactctccaacctctccatcatactcg
ccaacgtcaccatcttattctcccaccagcccaaactacagccccacatctccgtcctac
tcgcccacatcaccctcctactctccaacttcgccgtcttattctccaacatcaccaagc
tattctccaacttcaccttcttactctccaacttcaccatcttactccccaacttcacca
tcctactccccaacatcccccagctacagcccaacgtctcccagctacagcccaacctcg
ccgagttacagccctacctctccgtcttattcccccacatctccatcttactccccaacc
tccccttcttactctcccacctctccaagctactctccaacctccccatcctattcccca
acttctccaagctacagccccacttcgcccaactacacgcccacctcacctagttactcc
ccaacctctccatcttacagtcccacctcaccgtcctactcccccacctctcccaattac
accccaaccagcccaaattattcccccacctctccttcatactcccccacttcgccatcc
tactctccatccagtccgcgctacaccccgcaatctcccacctacaccccgagctcaccc
tcttacagcccgagctctccatcctattcccccacctctccaaaatatactcccacctcc
ccctcttacagtcccagctctcctgaatataccccaacatcccccaaatattcccctact
tccccaaagtactcacccacttcacccaaatacagtcccacctctccaacctactcccca
actacgcccaagtacagccctacttcccctacttactcgccaacttctcccacctacacc
ccaaccagcccaaaatattcccccacctctccaacttactctccaacttctccaaaatac
tcccctacatcccctacctactcgccaactagtcccaagggctccacctacagccccact
tctcctggctacagccccacctctccgacctacagcccagccatcagccctgatgatagc
gatgaagaaaataactaa
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integrated database retrieval system
